| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_1246 |
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| Symbol | fliF |
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| ID | 6145664 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 1244483 |
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| End bp | 1246141 |
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| Gene Length | 1659 bp |
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| Protein Length | 552 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 641616124 |
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| Product | flagellar MS-ring protein |
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| Protein accession | YP_001743307 |
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| Protein GI | 170682432 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
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| TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 51 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATGCGA CTGCAGCCCA GACAAAATCT CTTGAGTGGC TTAATCGCCT GCGTGCGAAT
CCGAAAATTC CATTGATTGT TGCCGGTTCC GCGGCAGTGG CGGTCATGGT CGCACTGATC
CTGTGGGCGA AAGCCCCCGA CTACCGCACA TTATTCAGCA ATCTTTCCGA TCAGGATGGT
GGCGCAATTG TCAGCCAACT GACGCAAATG AATATTCCTT ACCGCTTCAG CGAAGCCAGC
GGCGCTATTG AAGTTCCGGC AGATAAAGTT CACGAACTGC GTCTGCGCCT GGCACAACAA
GGTTTGCCCA AAGGCGGCGC GGTCGGTTTC GAACTACTCG ATCAGGAAAA GTTTGGTATC
AGCCAGTTCA GCGAACAGGT GAATTATCAG CGGGCGCTGG AAGGCGAGCT TTCTCGTACC
ATCGAAACTA TCGGCCCGGT AAAAGGGGCG CGCGTACATC TGGCAATGCC GAAACCGTCT
TTATTCGTCC GTGAACAAAA ATCCCCTTCT GCATCGGTGA CGGTAAATCT GTTACCCGGC
CGCGCACTCG ATGAAGGGCA AATTAGCGCC ATTGTGCATC TGGTTTCCAG CGCCGTTGCT
GGTCTGCCGC CGGGAAACGT CACGCTGGTG GATCAGGGCG GACATCTGTT AACCCAGTCC
AATACCAGCG GGCGCGATCT TAATGATGCT CAGTTGAAAT ATGCCAGCGA TGTCGAAGGC
CGTATTCAGC GGCGTATTGA AGCAATCCTG TCGCCTATTG TTGGTAACGG TAATATTCAC
GCCCAGGTCA CGGCGCAGCT GGACTTCGCC AGTAAAGAAC AAACGGAAGA ACAGTATCGC
CCTAACGGTG ATGAATCTCA TGCGGCGCTT CGTTCACGCC AGCTTAATGA GAGCGAGCAA
AGCGGTTCCG GTTATCCGGG CGGCGTACCG GGGGCGTTGT CGAATCAACC GGCACCTGCG
AATAACGCGC CAATCAGCAC GCCTCCGGCA AATCAAAATA ACCGCCAGCA GCAGGCGAGC
ACCACCAGCA ATAGCGGGCC GCGTAGCACA CAGCGGAATG AAACCAGTAA CTACGAAGTC
GATCGCACCA TTCGTCATAC CAAAATGAAC GTGGGCGATG TGCAACGTCT GTCAGTCGCG
GTAGTGGTGA ATTACAAAAC CTTGCCAGAC GGTAAACCAT TGCCTCTCAG CAACGAACAG
ATGAAGCAAA TTGAAGATCT GACCCGCGAG GCGATGGGCT TTTCTGAAAA ACGCGGTGAC
TCGCTCAATG TCGTTAACTC GCCGTTCAAT AGCAGTGACG AAAGCGGCGG AGAACTGCCG
TTCTGGCAAC AGCAAGCGTT TATCGATCAG TTGCTGGCTG CCGGTCGCTG GTTGCTGGTA
CTGCTGGTGG CGTGGCTGCT GTGGCGGAAA GCGGTACGCC CGCAGTTAAC ACGTCGCGCC
GAGGCGATGA AAGCTGTACA GCAACAGGCG CAGGCCCGTG AGGAAGTGGA AGATGCGGTG
GAAGTCCGCC TGAGCAAAGA CGAACAACTC CAACAACGAC GCGCTAACCA ACGTCTGGGG
GCAGAAGTCA TGAGCCAGCG TATCCGTGAA ATGTCTGATA ACGATCCGCG CGTGGTGGCG
CTGGTCATTC GCCAGTGGAT AAATAACGAT CATGAGTAA
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| Protein sequence | MNATAAQTKS LEWLNRLRAN PKIPLIVAGS AAVAVMVALI LWAKAPDYRT LFSNLSDQDG
GAIVSQLTQM NIPYRFSEAS GAIEVPADKV HELRLRLAQQ GLPKGGAVGF ELLDQEKFGI
SQFSEQVNYQ RALEGELSRT IETIGPVKGA RVHLAMPKPS LFVREQKSPS ASVTVNLLPG
RALDEGQISA IVHLVSSAVA GLPPGNVTLV DQGGHLLTQS NTSGRDLNDA QLKYASDVEG
RIQRRIEAIL SPIVGNGNIH AQVTAQLDFA SKEQTEEQYR PNGDESHAAL RSRQLNESEQ
SGSGYPGGVP GALSNQPAPA NNAPISTPPA NQNNRQQQAS TTSNSGPRST QRNETSNYEV
DRTIRHTKMN VGDVQRLSVA VVVNYKTLPD GKPLPLSNEQ MKQIEDLTRE AMGFSEKRGD
SLNVVNSPFN SSDESGGELP FWQQQAFIDQ LLAAGRWLLV LLVAWLLWRK AVRPQLTRRA
EAMKAVQQQA QAREEVEDAV EVRLSKDEQL QQRRANQRLG AEVMSQRIRE MSDNDPRVVA
LVIRQWINND HE
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