| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_0595 |
|---|
| Symbol | |
|---|
| ID | 6147220 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | - |
|---|
| Start bp | 605887 |
|---|
| End bp | 607134 |
|---|
| Gene Length | 1248 bp |
|---|
| Protein Length | 415 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641615487 |
|---|
| Product | small conductance mechanosensitive ion channel (MscS) family protein |
|---|
| Protein accession | YP_001742693 |
|---|
| Protein GI | 170681714 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0668] Small-conductance mechanosensitive channel |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 64 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGGATT TAATATCCCA GGTTGAAGAT TTAGCGGGTA TTGAGATCGA TCACACCACC
TCAATGGTGA TGATTTTCGG TATTATTTTT CTGACCGCCG TCGTGGTGCA TATTTTTTTG
CATTGGGTGG TACTGCGGAC CTTCGAAAAA CGTGCCATCG CCAGTTCACG GCTATGGTTG
CAAATCATTA CCCAGAATAA ACTCTTCCAC CGTTTAGCTT TTACCCTGCA GGGGATTATC
GTCAATATTC AGGCGGTATT CTGGCTGCAA AAAGGCACCG AAGCGGCAGA TATTCTGACT
ACCTGCGCGC AGTTGTGGAT CATGATGTAT GCGCTGCTTT CAGTTTTCTC TCTGCTGGAT
GTTATTTTGA ATCTGGCACA GAAATTCCCG GCGGCATCTC AGTTACCGCT GAAAGGGATA
TTTCAGGGGA TTAAACTGAT CGGCGCGATT CTGGTCGGCA TTTTGATGAT CTCACTGCTG
ATTGGTCAGT CGCCAGCGAT TCTGATCAGC GGTCTTGGTG CAATGGCTGC CGTGCTGATG
TTGGTATTTA AAGATCCGAT TCTTGGTCTG GTGGCAGGTA TTCAGCTTTC CGCGAACGAT
ATGCTGAAAC TGGGCGACTG GCTGGAGATG CCGAAATACG GCGCGGATGG CGCGGTGATC
GATATTGGGT TAACCACCGT CAAAGTGCGT AACTGGGACA ATACCATTAC CACTATTCCC
ACCTGGTCTC TGGTCTCTGA CTCCTTTAAA AACTGGAGCG GGATGTCAGC ATCTGGCGGG
CGACGTATTA AGCGCAGTAT CAGTATTGAT GTCACCAGTA TTCGTTTTCT TGATGAAGAC
GAAATGCAAC GTCTGAATAA AGCGCATTTG TTAAAACCTT ATTTAACCAG CCGCCACAAG
GAAATTAATG AGTGGAATCG CCAGCAAGGT TCTACGGAGT CGGTATTAAA CCTGCGCCGA
ATGACCAATA TTGGAACCTT TCGTGCCTAT CTGAACGAAT ATCTACGTAA CCATCCGCGG
ATTCGTAAAG ATATGACCTT AATGGTACGC CAACTGGCTC CTGGCGATAA CGGTTTACCG
CTCGAGATCT ATGCGTTTAC CAACACCGTG GTGTGGCTGG AATATGAAAG CATTCAGGCT
GATATATTCG ACCACATATT TGCGATTGTC GAAGAGTTTG GTCTGCGACT TCATCAGTCG
CCAACCGGCA ATGATATTCG CTCTCTGGCG GGTGCATTTA AGCAGTAA
|
|---|
| Protein sequence | MQDLISQVED LAGIEIDHTT SMVMIFGIIF LTAVVVHIFL HWVVLRTFEK RAIASSRLWL
QIITQNKLFH RLAFTLQGII VNIQAVFWLQ KGTEAADILT TCAQLWIMMY ALLSVFSLLD
VILNLAQKFP AASQLPLKGI FQGIKLIGAI LVGILMISLL IGQSPAILIS GLGAMAAVLM
LVFKDPILGL VAGIQLSAND MLKLGDWLEM PKYGADGAVI DIGLTTVKVR NWDNTITTIP
TWSLVSDSFK NWSGMSASGG RRIKRSISID VTSIRFLDED EMQRLNKAHL LKPYLTSRHK
EINEWNRQQG STESVLNLRR MTNIGTFRAY LNEYLRNHPR IRKDMTLMVR QLAPGDNGLP
LEIYAFTNTV VWLEYESIQA DIFDHIFAIV EEFGLRLHQS PTGNDIRSLA GAFKQ
|
|---|
| |