Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_0282 |
Symbol | lafS |
ID | 6147138 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | + |
Start bp | 291949 |
End bp | 292668 |
Gene Length | 720 bp |
Protein Length | 239 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 641615180 |
Product | flagellar biosynthesis sigma factor |
Protein accession | YP_001742389 |
Protein GI | 170682912 |
COG category | [K] Transcription |
COG ID | [COG1191] DNA-directed RNA polymerase specialized sigma subunit |
TIGRFAM ID | [TIGR02479] RNA polymerase sigma factor, FliA/WhiG family [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.00828678 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 48 |
Fosmid unclonability p-value | 0.769765 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTACAGG ACGTATTATT CGAGTCAGAA GAATTTGCTG CCGCGCCGGT ATTAACCCCG CAGCAGGAGA GCCACTACTT GCAGGCCTAT TTACCACTGG TGCGTAAAGT GGTGCGGCAA CTTGCCCCGC AGTGTAATTG CATTATTGAT CGTCAGGATA TGGAACAAAC GGCGTTAATG GGGCTGCTTA ATGCCATTCG CCGCTACGGG CTGCCGGACG AAGGTTTTGC GGGCTATGCC GTGCACCGTA TTCGCGGTGC GATCCTGGAT GAGCTGCGCG CTCTCGACTG GCGACCGCGC CAGCTGCGAC AGAAATATCA TCAGATGAAA GACCTGATTC GCGAAACGCG TAAAAAACTG GGGCACGAGC CTGAGTGGTC AGAACTGGCC GTGGAAGGGA TCTCGCATGA AGATTATCTC GAATATCAGC AACTGGAAGG GGCGGAAACG CTCGCCAGCC TTGACGAACT GCTGAACGGC GAAGGGCCAG GCATTCCGCT TGCTGGCCGG GAACTGGAAG ATCAGTTTGT CACCCAGCAA ATGTTGCAAC ACGCGCTTTC ACAATTAAGC GAAAAAGAGC AACTGATCCT CTCCATGTAT TACCAGCATG AGATGAATCT CAAAGAGATT GCGCTGGTAT TAGGGCTAAC CGAGGCCCGA ATTTGTCAAC TGAATAAACA GATCGCGCAG AAAATTCGTG ATTTTGTCTA TCCGAATTAA
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Protein sequence | MLQDVLFESE EFAAAPVLTP QQESHYLQAY LPLVRKVVRQ LAPQCNCIID RQDMEQTALM GLLNAIRRYG LPDEGFAGYA VHRIRGAILD ELRALDWRPR QLRQKYHQMK DLIRETRKKL GHEPEWSELA VEGISHEDYL EYQQLEGAET LASLDELLNG EGPGIPLAGR ELEDQFVTQQ MLQHALSQLS EKEQLILSMY YQHEMNLKEI ALVLGLTEAR ICQLNKQIAQ KIRDFVYPN
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