| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_0151 |
|---|
| Symbol | |
|---|
| ID | 6143769 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | - |
|---|
| Start bp | 165865 |
|---|
| End bp | 166605 |
|---|
| Gene Length | 741 bp |
|---|
| Protein Length | 246 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641615052 |
|---|
| Product | putative chaperone protein EcpD |
|---|
| Protein accession | YP_001742268 |
|---|
| Protein GI | 170680970 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3121] P pilus assembly protein, chaperone PapD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.00134354 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 64 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTTTAA ACGCTAAACA TACTGCAGCT GTATGCTTCG CCACTTGTAT GAGCTTAAGC
GCATCGGCAA TAGCAGATAT CGTAATTTCA GGAACTCGCG TAATTTATAA AAGTAATGAA
AAAAGCGTTA ATGTTCGGCT GGAAAATAAG GGGAATAATC CGTTACTCGT TCAGAGCTGG
CTGGATACTG GCGACGATAG TGCTGAACCA GGGAGTATTA CTGTCCCATT TACCGCCACC
CCTCCTGTTT CGCGAATTGA TGCCAAACGT GGTCAAACTA TTAAATTGAT GTACACGGCT
TCCTCACCGC TGCCAAAAGA CCGAGAAAGT GTTTTCTGGT TTAACGTACT CGAGGTTCCA
CCCAAACCTG ACGCAGATAA AGTCGCCAAC CAGAGTCTTC TGCAATTGGC ATTCCGTACG
CGTATCAAAT TATTTTATCG CCCGGAAGGT TTAAACGGAC TGCCATCAGA TGCACCCGCA
GCACTGAAAT GGTCATGGGC AACCTCTGCT GGAAAAACTG CATTGCGCGT CGCAAATCCG
ACACCGTATC ACGTCTCATT CAGTAGTGGT GATTTAGTCG CCAATGGCAA AACCTACCCC
CTGGATGTAA AAATGGTAGC CCCGCTGAGT GAAGAAACCT TCGATATAAA AGGCATGAGT
GGTAAAGCAA GTTCTGCCAA AGTGCATTTC TTCGCCATAA ATGACTTTGG TGGTGCAATT
GAAGGCAATG CCAGCCTGTA A
|
|---|
| Protein sequence | MFLNAKHTAA VCFATCMSLS ASAIADIVIS GTRVIYKSNE KSVNVRLENK GNNPLLVQSW
LDTGDDSAEP GSITVPFTAT PPVSRIDAKR GQTIKLMYTA SSPLPKDRES VFWFNVLEVP
PKPDADKVAN QSLLQLAFRT RIKLFYRPEG LNGLPSDAPA ALKWSWATSA GKTALRVANP
TPYHVSFSSG DLVANGKTYP LDVKMVAPLS EETFDIKGMS GKASSAKVHF FAINDFGGAI
EGNASL
|
|---|
| |