Gene EcSMS35_0130 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcSMS35_0130 
SymbolspeD 
ID6147261 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli SMS-3-5 
KingdomBacteria 
Replicon accessionNC_010498 
Strand
Start bp144996 
End bp145790 
Gene Length795 bp 
Protein Length264 aa 
Translation table11 
GC content47% 
IMG OID641615031 
ProductS-adenosylmethionine decarboxylase 
Protein accessionYP_001742247 
Protein GI170682621 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1586] S-adenosylmethionine decarboxylase 
TIGRFAM ID[TIGR03331] S-adenosylmethionine decarboxylase proenzyme, Escherichia coli form 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.274606 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones54 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGAAAAAAC TGAAACTGCA TGGCTTTAAT AATCTGACCA AAAGTCTGAG TTTTTGTATT 
TACGATATCT GCTACGCCAA AACTGCCGAA GAACGCGACG GTTATATTGC TTATATCGAT
GAACTCTATA ATGCCAACCG TCTGACCGAA ATCCTGTCAG AAACCTGTTC CATTATCGGG
GCCAATATTC TTAACATCGC CCGCCAGGAT TACGAACCAC AGGGTGCCAG CGTCACTATT
CTGGTGAGTG AAGAACCGGT TGACCCGAAA CTTATCGACA AAACAGAACA CCCCGGCCCA
CTGCCAGAAA CGGTCGTTGC CCATCTCGAT AAAAGTCATA TTTGCGTACA TACCTACCCG
GAAAGTCATC CTGAAGGCGG TTTATGTACC TTCCGCGCCG ATATTGAAGT CTCCACCTGC
GGCGTGATTT CCCCGCTGAA GGCGCTGAAT TACCTGATCC ACCAGCTTGA GTCCGATATC
GTAACCATTG ATTATCGCGT GCGCGGTTTT ACCCGCGACA TTAACGGTAT GAAGCACTTT
ATCGACCATG AGATTAATTC GATTCAGAAC TTTATGTCTG ACGATATGAA GGCGCTGTAT
GACATGGTGG ATGTGAACGT CTATCAGGAG AATATCTTCC ATACCAAGAT GTTGCTTAAA
GAGTTCGACC TTAAGCACTA CATGTTCCAC ACCAAACCGG AAGATTTAAC CGACAGCGAG
CGCCAGGAAA TTACCGCTGC GCTGTGGAAA GAAATGCGCG AGATTTATTA CGGGCGCAAT
ATGCCCGCTG TTTAA
 
Protein sequence
MKKLKLHGFN NLTKSLSFCI YDICYAKTAE ERDGYIAYID ELYNANRLTE ILSETCSIIG 
ANILNIARQD YEPQGASVTI LVSEEPVDPK LIDKTEHPGP LPETVVAHLD KSHICVHTYP
ESHPEGGLCT FRADIEVSTC GVISPLKALN YLIHQLESDI VTIDYRVRGF TRDINGMKHF
IDHEINSIQN FMSDDMKALY DMVDVNVYQE NIFHTKMLLK EFDLKHYMFH TKPEDLTDSE
RQEITAALWK EMREIYYGRN MPAV