| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcHS_A3152 |
|---|
| Symbol | glcD |
|---|
| ID | 5595188 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli HS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009800 |
|---|
| Strand | - |
|---|
| Start bp | 3164156 |
|---|
| End bp | 3165646 |
|---|
| Gene Length | 1491 bp |
|---|
| Protein Length | 496 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 640922272 |
|---|
| Product | glycolate oxidase subunit GlcD |
|---|
| Protein accession | YP_001459770 |
|---|
| Protein GI | 157162452 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0277] FAD/FMN-containing dehydrogenases |
|---|
| TIGRFAM ID | [TIGR00387] glycolate oxidase, subunit GlcD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 60 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGTACGAAG AGCGTCTTGA TGGCGCTTTA CCCGATGTCG ACCGCACATC GGTACTGATG
GCACTGCGTG AGCATGTCCC TGGACTTGAG ATCCTGCATA CCGATGAGGA GATCATTCCT
TACGAGTGTG ACGGGTTGAG CGCGTATCGC ACGCGTCCAT TACTGGTTGT TCTGCCTAAG
CAAATGGAAC AGGTGACAGC GATTCTGGCT GTCTGCCATC GCCTGCGTGT ACCGGTGGTG
ACCCGTGGTG CAGGCACCGG GCTTTCTGGT GGCGCGCTGC CGCTGGAAAA AGGTGTGTTG
TTGGTGATGG CGCGCTTTAA AGAGATCCTC GACATTAACC CCGTTGGTCG CCGCGCGCGC
GTGCAGCCAG GCGTGCGTAA CCTGGCGATC TCCCAGGCCG TTGCACCGCA TAATCTCTAC
TACGCACCGG ACCCTTCCTC ACAAATCGCC TGTTCCATTG GCGGCAATGT GGCTGAAAAT
GCCGGCGGCG TCCACTGCCT GAAATATGGT CTGACCGTAC ATAACCTGCT GAAAATTGAA
GTGCAAACGC TGGACGGCGA GGCACTGACG CTGGGATCGG ACGCGCTGGA TTCACCTGGT
TTTGACCTGC TGGCGCTGTT CACCGGATCG GAAGGTATGC TCGGCGTGAC CACCGAAGTG
ACGGTAAAAC TGCTGCCGAA GCCGCCCGTG GCGCGGGTTC TGTTAGCCAG CTTTGACTCG
GTAGAAAAAG CCGGACTTGC GGTTGGTGAC ATCATCGCCA ATGGCATTAT CCCCGGCGGG
CTGGAGATGA TGGATAACCT GTCGATCCGC GCGGCGGAAG ATTTTATTCA TGCCGGTTAT
CCCGTCGACG CCGAAGCGAT TTTGTTATGC GAGCTGGACG GCGTGGAGTC TGACGTACAG
GAAGACTGCG AGCGGGTTAA CGACATCTTG TTGAAAGCGG GCGCGACTGA CGTCCGTCTG
GCACAGGACG AAGCAGAGCG CGTACGTTTC TGGGCCGGTC GCAAAAATGC GTTCCCGGCG
GTAGGACGTA TCTCCCCGGA TTACTACTGC ATGGATGGCA CCATCCCGCG TCGCGCCCTG
CCTGGCGTAC TGGAAGGCAT TGCCCGTTTA TCGCAGCAAT ATGATTTACG TGTTGCCAAC
GTCTTTCATG CCGGAGATGG CAACATGCAC CCGTTAATCC TTTTCGATGC CAACGAACCC
GGTGAATTTG CCCGCGCGGA AGAGCTGGGC GGGAAGATCC TCGAACTCTG CGTTGAAGTT
GGCGGCAGCA TCAGTGGCGA ACATGGCATC GGGCGAGAAA AAATCAATCA AATGTGCGCC
CAGTTCAACA GCGATGAAAT CACGACCTTC CATGCGGTCA AGGCGGCGTT TGACCCCGAT
GGTTTGCTGA ACCCTGGGAA AAACATTCCC ACGCTACACC GCTGTGCTGA ATTTGGTGCC
ATGCATGTGC ATCACGGTCA TTTACCTTTC CCTGAACTGG AGCGTTTCTG A
|
|---|
| Protein sequence | MYEERLDGAL PDVDRTSVLM ALREHVPGLE ILHTDEEIIP YECDGLSAYR TRPLLVVLPK
QMEQVTAILA VCHRLRVPVV TRGAGTGLSG GALPLEKGVL LVMARFKEIL DINPVGRRAR
VQPGVRNLAI SQAVAPHNLY YAPDPSSQIA CSIGGNVAEN AGGVHCLKYG LTVHNLLKIE
VQTLDGEALT LGSDALDSPG FDLLALFTGS EGMLGVTTEV TVKLLPKPPV ARVLLASFDS
VEKAGLAVGD IIANGIIPGG LEMMDNLSIR AAEDFIHAGY PVDAEAILLC ELDGVESDVQ
EDCERVNDIL LKAGATDVRL AQDEAERVRF WAGRKNAFPA VGRISPDYYC MDGTIPRRAL
PGVLEGIARL SQQYDLRVAN VFHAGDGNMH PLILFDANEP GEFARAEELG GKILELCVEV
GGSISGEHGI GREKINQMCA QFNSDEITTF HAVKAAFDPD GLLNPGKNIP TLHRCAEFGA
MHVHHGHLPF PELERF
|
|---|
| |