Gene EcHS_A2972 details

Gene Information

• Locus tag: EcHS_A2972
• Symbol: ppdA
• ID: 5594420
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Escherichia coli HS
• Kingdom: Bacteria
• Replicon accession: NC_009800
• Strand: -
• Start bp: 2982026
• End bp: 2982496
• Gene Length: 471 bp
• Protein Length: 156 aa
• Translation table: 11
• GC content: 54%
• IMG OID: 640922091
• Product: hypothetical protein
• Protein accession: YP_001459596
• Protein GI: 157162278
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG2165] Type II secretory pathway, pseudopilin PulG
• TIGRFAM ID: [TIGR02532] prepilin-type N-terminal cleavage/methylation domain

Plasmid Coverage information

• Num covering plasmid clones: 57
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAACAC AACGTGGTTA TACGCTGATT GAAACGCTGG TCGCGATGCT GATTTTGGTC 
ATGCTAAGCG CAAGTGGACT CTATGGCTGG CAATACTGGC AGCAGTCGCA ACGGCTATGG 
CAAACCGCCA GCCAGGCGCG GGACTATTTG CTCTATTTAC GTGAAGATGC CAACTGGCAT 
AACCGCGACC ACAGTATCAG CGTTATCAGG GAGGGGACGT TATGGTGCCT TGTGAGTTCC 
GCTGCTGGGG CCAATACCTG TCATGGCAGT TCACCATTGG TCTTTGTGCC ACGCTGGCCC 
GAAGTCGAAA TGAGCGACCT GACACCTTCG CTTGCTTTCT TTGGCCTGCG CAATACCGCA 
TGGGCCGGGC ATATTCGCTT CAAAAACTCA ACGGGCGAGT GGTGGCTGGT GGTTTCGCCG 
TGGGGAAGAC TCCGGCTTTG TCAGCAAGGA GAAACAGAAG GATGCCTGTA A 

 

Protein sequence

MKTQRGYTLI ETLVAMLILV MLSASGLYGW QYWQQSQRLW QTASQARDYL LYLREDANWH 
NRDHSISVIR EGTLWCLVSS AAGANTCHGS SPLVFVPRWP EVEMSDLTPS LAFFGLRNTA 
WAGHIRFKNS TGEWWLVVSP WGRLRLCQQG ETEGCL