Gene EcHS_A2485 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcHS_A2485 
Symbol 
ID5593595 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli HS 
KingdomBacteria 
Replicon accessionNC_009800 
Strand
Start bp2491659 
End bp2492198 
Gene Length540 bp 
Protein Length179 aa 
Translation table11 
GC content55% 
IMG OID640921606 
Productfimbrial protein 
Protein accessionYP_001459140 
Protein GI157161822 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3539] P pilus assembly protein, pilin FimA 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones63 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAACAG CACACATTTA TTCACCCGGT TATGCGCTGT TAGCAGGCCT GCTGCTGACC 
GCCAGCACGG GGGCACGGGC AGTCGATAAC AACCTGCATT TTTACGGCAA CCTGCTGAGT
AAATCCTGCA CGCTGGTGGT GGATGGTGCC AATCTGGCAG AAATCCATTT TCCCACCGTC
AGCAACCGGG ATTTGATAGT CGCCGGACAG TCTGTGCATC TGCCGGTTGT GTTTAAGCTG
AAAGACTGCA AAGGGCCAGC GGGCTACAAC GTCAAAGTCA CGCTGAGCGG CACCGAAGAC
AGCGGTCAGC CGGGTTTTCT GGCAGTCGAT GACACCTCCA CCGCGCAGGG CGTGGGGATA
GGGATGGAAA CGCTCGACGG CAAGCGGGTG GATATTAACA ACACTACCGG GGCGACTTTT
GCGCTTACCA ACGGCAACAA TGATATTAAT TTCCGGGCCT GGATCCAGGC GAAAAGCGGT
CGCGATGTGA CGATCGGTGA ATTCACTGCC AGCCTGACCG CTACCTTCGA GTATATTTAA
 
Protein sequence
MKTAHIYSPG YALLAGLLLT ASTGARAVDN NLHFYGNLLS KSCTLVVDGA NLAEIHFPTV 
SNRDLIVAGQ SVHLPVVFKL KDCKGPAGYN VKVTLSGTED SGQPGFLAVD DTSTAQGVGI
GMETLDGKRV DINNTTGATF ALTNGNNDIN FRAWIQAKSG RDVTIGEFTA SLTATFEYI