| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcHS_A0363 |
|---|
| Symbol | |
|---|
| ID | 5592457 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli HS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009800 |
|---|
| Strand | - |
|---|
| Start bp | 376124 |
|---|
| End bp | 378421 |
|---|
| Gene Length | 2298 bp |
|---|
| Protein Length | 765 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640919548 |
|---|
| Product | putative outer membrane autotransporter |
|---|
| Protein accession | YP_001457134 |
|---|
| Protein GI | 157159816 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4625] Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain |
|---|
| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 0.497355 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAACA GTAAGGCATT TTACCGCAGC GCATTAGCGA CAGCTATTGT TATGGCTCTT
TCTGCACCAG CATTCGCTGC TGATAACGCG GTATCAACTA CACCGGTTAC ACTGGATAAA
GATAAGACAA CTCTGGATCA AGATGTTGTT ATTAGCAATA CAGCAGACCA ACAGATTACA
GCCGTAACAA TTAATGCGGC AGATAAAGAT CTTAATGTTA CTTTTGGCGG TCATGATATT
ACTGCTGAAT CAACGGCAGA CAAAAAATTC CTTGAAGGTG TAAAAGTTAG CGGTGACAAA
AATGTTGTGA TTAATGCTAC AGGCTCCACC ATCACAGCTC AAGGTGAAGG CACCTATGTC
CGGACTGCAA TGGTCATTTC TTCAACTGGC GATGTTGTTG TTAATGGCGG TAATTTCGTT
GCAAAAAATG AAAAAAGTAG TGCGACAGGA ATATCTCTGG AAGGGGCCAC GGGAAATAAT
GTAACGCTAA ATGGTACAAC CATAAATGCT CAAGGTAATA AGAGTTCCAG CAACGGCTCT
ACGGCAATTT TTGCTCAAAA GGGTAGCGTA TTGAATGGTT TTAAAGGTGA TGCAACCGAC
AACATTACCC TTGCTGGCTC AAATATTATT AATGGCCGGA TTGAAACAAT AGTTATTGCC
AAGGAGAATA CGGGAACTCA TACAGTCAAT CTGAATATTA AGGATGGCTC AGTAATTGGG
GCGGCTAATA ATAAACAAAC AATTTATGCT TCTGCTTCGG CACAAGGAGC AGGTTCAGCA
ACGCAAAATT TAAATTTATC TGTCGCCGAT TCAACCATCT ACTCTGATAT CCATGCCCTT
TCTGCAAGCG AGAATTCAGC CGGTACCACA ACAAATGTAA ACATGAACGT TGCCCGCTCT
TACTGGGAAG GTAATGCTTA TACCTTCAAT AGCGGCGATA AAGCGGGTAG TAATCTGGAT
ATAAATCTTT CCGATAGCTC AGTCTGGAAA GGCAAAGTTT CAGGGGCAGG AGATGCCAGT
GTATCTCTGC AAAACGGGTC TGTCTGGAAT GTTACGGGAT CCTCAACTGT TGATGCTCTG
GCAGTAAAAG ACAGTACGGT TAATATCACG AAGGCTACAG TCAATACTGG CACGTTTGCT
TCTCAGAACG GCACTCTGAT TGTTGATGCC TCTTCTGAAA ACACTCTGGA TATCAGCGGA
AAAGCGAGCG GTGACTTGCG TGTTTACAGT GCGGGTTCAT TGGATCTTAT CAATGAACAA
ACGGCATTTA TTTCTACCGG CAAAGACAGC ACTCTAAAAG CCACAGGCAC AACGGAAGGT
GGTCTGTATC AATATGACCT GACACAGGGA GCTGATGGTA ACTTTTATTT CGTAAAAAAC
ACGCATAAAG CATCCAACGC CAGCTCCCTG ATTCAGGCAA TGGCAGCAGC TCCGGCTAAC
GTTGCTAATC TGCAGGCTGA CACGCTCTCA GCCCGTCAGG ATGCTGTCCG TCTGAGCGAA
AATGACAAGG GCGGCGTATG GATTCAGTAC TTTGGCGGTA AACAGAAACA TACCACCGCG
GGAAATGCAT CCTATGACCT GGATGTAAAC GGTGTAATGC TGGGTGGTGA TACCCGCTTC
ATGACTGAAG ATGGTAGCTG GCTGGCAGGT GTAGCGATGT CTTCTGCGAA AGGTGACATG
ACCACCATGC AGAGCAAAGG CGACACTGAA GGTTACAGCT TCCACGCTTA CCTGAGCCGC
CAGTATAACA ACGGTATCTT CATTGATACT GCTGCACAGT TTGGTCACTA CAGCAACACG
GCAGATGTTC GCCTGATGAA TGGTGGCGGT ACCATCAAAG CTGACTTTAA CACCAATGGT
TTCGGTGCGA TGGTTAAAGG CGGTTACACA TGGAAAGACG GTAATGGCCT GTTTATTCAG
CCATATGCCA AACTGTCTGC GCTGACGCTG GAAGGTGTGG ATTATCAGCT CAACGGCGTG
GACGTTCATT CTGACAGCTA TAACTCTGTG CTGGGTGAGG CCGGTACGCG CGTGGGTTAT
GACTTCGCTG TGGGCAACTC GACCGTTAAA CCTTATCTGA ATCTGGCCGC ACTGAACGAA
TTCTCTGATG GCAACAAAGT CCGTCTGGGT GATGAGTCTG TCAATGCCAG CATTGACGGT
GCAGCATTCC GCGTGGGTGC AGGTGTACAG GCTGATATCA CCAAAAACAT GGGAGCATAT
GCAAGCCTTG ACTACACCAA AGGTGACGAC ATTGAGAACC CGCTACAGGG TGTAGTTGGT
ATCAATGTGA CCTGGTAA
|
|---|
| Protein sequence | MKNSKAFYRS ALATAIVMAL SAPAFAADNA VSTTPVTLDK DKTTLDQDVV ISNTADQQIT
AVTINAADKD LNVTFGGHDI TAESTADKKF LEGVKVSGDK NVVINATGST ITAQGEGTYV
RTAMVISSTG DVVVNGGNFV AKNEKSSATG ISLEGATGNN VTLNGTTINA QGNKSSSNGS
TAIFAQKGSV LNGFKGDATD NITLAGSNII NGRIETIVIA KENTGTHTVN LNIKDGSVIG
AANNKQTIYA SASAQGAGSA TQNLNLSVAD STIYSDIHAL SASENSAGTT TNVNMNVARS
YWEGNAYTFN SGDKAGSNLD INLSDSSVWK GKVSGAGDAS VSLQNGSVWN VTGSSTVDAL
AVKDSTVNIT KATVNTGTFA SQNGTLIVDA SSENTLDISG KASGDLRVYS AGSLDLINEQ
TAFISTGKDS TLKATGTTEG GLYQYDLTQG ADGNFYFVKN THKASNASSL IQAMAAAPAN
VANLQADTLS ARQDAVRLSE NDKGGVWIQY FGGKQKHTTA GNASYDLDVN GVMLGGDTRF
MTEDGSWLAG VAMSSAKGDM TTMQSKGDTE GYSFHAYLSR QYNNGIFIDT AAQFGHYSNT
ADVRLMNGGG TIKADFNTNG FGAMVKGGYT WKDGNGLFIQ PYAKLSALTL EGVDYQLNGV
DVHSDSYNSV LGEAGTRVGY DFAVGNSTVK PYLNLAALNE FSDGNKVRLG DESVNASIDG
AAFRVGAGVQ ADITKNMGAY ASLDYTKGDD IENPLQGVVG INVTW
|
|---|
| |