| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcHS_A0124 |
|---|
| Symbol | speD |
|---|
| ID | 5591002 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli HS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009800 |
|---|
| Strand | - |
|---|
| Start bp | 136427 |
|---|
| End bp | 137221 |
|---|
| Gene Length | 795 bp |
|---|
| Protein Length | 264 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640919311 |
|---|
| Product | S-adenosylmethionine decarboxylase |
|---|
| Protein accession | YP_001456906 |
|---|
| Protein GI | 157159588 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1586] S-adenosylmethionine decarboxylase |
|---|
| TIGRFAM ID | [TIGR03331] S-adenosylmethionine decarboxylase proenzyme, Escherichia coli form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.000000000000121988 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAAAAAAC TGAAACTGCA TGGCTTTAAT AATCTGACCA AAAGTCTGAG TTTTTGTATT
TACGATATCT GCTACGCCAA AACTGCCGAA GAGCGCGACG GTTATATTGC TTATATCGAT
GAACTCTATA ATGCCAACCG TCTGACCGAA ATCCTGTCAG AAACCTGTTC CATTATCGGG
GCCAATATTC TTAACATCGC CCGCCAGGAT TACGAACCAC AGGGTGCCAG CGTCACTATT
CTGGTGAGTG AAGAACCGGT CGACCCGAAA CTTATCGACA AAACAGAACA CCCCGGCCCA
CTGCCAGAAA CGGTCGTTGC CCATCTCGAT AAAAGTCATA TTTGCGTACA TACCTACCCG
GAAAGTCATC CTGAAGGCGG TTTATGTACC TTCCGCGCCG ATATTGAAGT CTCTACCTGC
GGCGTGATTT CTCCGCTGAA GGCGCTGAAT TACCTGATCC ACCAGCTTGA GTCCGATATC
GTAACCATTG ATTATCGCGT GCGCGGTTTT ACTCGCGACA TTAACGGTAT GAAACACTTT
ATCGACCATG AGATTAATTC GATTCAGAAC TTTATGTCTG ACGATATGAA GGCGCTGTAT
GACATGGTGG ATGTAAATGT CTATCAGGAA AATATCTTCC ATACCAAGAT GTTGCTTAAA
GAGTTCGACC TTAAGCACTA CATGTTCCAC ACCAAACCGG AAGATTTAAC CGACAGCGAG
CGCCAGGAAA TTACCGCTGC GCTGTGGAAA GAAATGCGCG AGATTTATTA CGGGCGCAAT
ATGCCAGCTG TTTAA
|
|---|
| Protein sequence | MKKLKLHGFN NLTKSLSFCI YDICYAKTAE ERDGYIAYID ELYNANRLTE ILSETCSIIG
ANILNIARQD YEPQGASVTI LVSEEPVDPK LIDKTEHPGP LPETVVAHLD KSHICVHTYP
ESHPEGGLCT FRADIEVSTC GVISPLKALN YLIHQLESDI VTIDYRVRGF TRDINGMKHF
IDHEINSIQN FMSDDMKALY DMVDVNVYQE NIFHTKMLLK EFDLKHYMFH TKPEDLTDSE
RQEITAALWK EMREIYYGRN MPAV
|
|---|
| |