| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcHS_A0120 |
|---|
| Symbol | lpdA |
|---|
| ID | 5595159 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli HS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009800 |
|---|
| Strand | + |
|---|
| Start bp | 129551 |
|---|
| End bp | 130975 |
|---|
| Gene Length | 1425 bp |
|---|
| Protein Length | 474 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640919307 |
|---|
| Product | dihydrolipoamide dehydrogenase |
|---|
| Protein accession | YP_001456902 |
|---|
| Protein GI | 157159584 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1249] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes |
|---|
| TIGRFAM ID | [TIGR01350] dihydrolipoamide dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 0.0447957 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTACTG AAATCAAAAC TCAGGTCGTG GTACTTGGGG CAGGCCCCGC AGGTTACTCC
GCTGCCTTCC GTTGCGCTGA TTTAGGTCTG GAAACCGTAA TCGTAGAACG TTACAACACC
CTTGGCGGTG TTTGCCTGAA CGTCGGCTGT ATCCCTTCTA AAGCACTGCT GCACGTAGCA
AAAGTTATCG AAGAAGCCAA AGCGCTGGCT GAACACGGTA TCGTCTTCGG CGAACCGAAA
ACCGATATTG ACAAGATTCG TACCTGGAAA GAGAAAGTGA TCAATCAGCT GACCGGTGGT
CTGGCTGGTA TGGCGAAAGG CCGCAAAGTC AAAGTGGTCA ACGGTCTGGG TAAATTTACC
GGGGCTAACA CCCTGGAAGT TGAAGGTGAG AACGGTAAAA CCGTGATCAA CTTCGACAAC
GCGATCATTG CAGCGGGTTC TCGCCCGATC CAACTGCCGT TTATTCCGCA TGAAGATCCG
CGTATCTGGG ACTCCACTGA CGCGCTGGAA CTGAAAGAAG TACCAGAACG CCTGCTGGTA
ATGGGTGGCG GTATCATCGG TCTGGAAATG GGCACCGTAT ACCACGCGCT GGGTTCACAG
ATTGACGTGG TTGAAATGTT CGACCAGGTT ATCCCGGCAG CTGACAAAGA CATCGTTAAA
GTCTTCACCA AGCGTATCAG CAAGAAATTC AACCTGATGC TGGAAACCAA AGTTACCGCC
GTTGAAGCGA AAGAAGACGG TATTTATGTG ACGATGGAAG GCAAAAAAGC ACCCGCTGAA
CCGCAGCGTT ACGACGCCGT GCTGGTAGCG ATTGGTCGTG TGCCGAACGG TAAAAACCTC
GACGCAGGCA AAGCTGGCGT GGAAGTGGAC GACCGTGGTT TCATCCGCGT TGACAAACAG
CTGCGTACCA ACGTACCGCA CATCTTTGCT ATCGGCGATA TCGTCGGTCA GCCGATGCTG
GCACACAAAG GTGTTCACGA AGGTCACGTT GCCGCTGAAG TTATCGCCGG TAAGAAACAC
TACTTCGATC CGAAAGTTAT CCCGTCCATC GCCTATACCG AACCAGAAGT TGCATGGGTA
GGTCTGACTG AGAAAGAAGC GAAAGAGAAA GGCATCAGCT ATGAAACCGC CACCTTCCCG
TGGGCTGCTT CTGGTCGTGC TATCGCTTCC GACTGCGCAG ACGGTATGAC CAAGCTGATT
TTCGACAAAG AATCTCACCG TGTGATCGGT GGTGCGATTG TCGGTACCAA CGGCGGCGAG
CTGCTGGGTG AAATCGGCCT GGCAATCGAA ATGGGTTGTG ATGCTGAAGA CATCGCACTG
ACCATCCACG CGCACCCGAC TCTGCACGAG TCTGTGGGCC TGGCGGCAGA AGTGTTCGAA
GGTAGCATTA CCGACCTGCC GAACCCGAAA GCGAAGAAGA AGTAA
|
|---|
| Protein sequence | MSTEIKTQVV VLGAGPAGYS AAFRCADLGL ETVIVERYNT LGGVCLNVGC IPSKALLHVA
KVIEEAKALA EHGIVFGEPK TDIDKIRTWK EKVINQLTGG LAGMAKGRKV KVVNGLGKFT
GANTLEVEGE NGKTVINFDN AIIAAGSRPI QLPFIPHEDP RIWDSTDALE LKEVPERLLV
MGGGIIGLEM GTVYHALGSQ IDVVEMFDQV IPAADKDIVK VFTKRISKKF NLMLETKVTA
VEAKEDGIYV TMEGKKAPAE PQRYDAVLVA IGRVPNGKNL DAGKAGVEVD DRGFIRVDKQ
LRTNVPHIFA IGDIVGQPML AHKGVHEGHV AAEVIAGKKH YFDPKVIPSI AYTEPEVAWV
GLTEKEAKEK GISYETATFP WAASGRAIAS DCADGMTKLI FDKESHRVIG GAIVGTNGGE
LLGEIGLAIE MGCDAEDIAL TIHAHPTLHE SVGLAAEVFE GSITDLPNPK AKKK
|
|---|
| |