| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcE24377A_3963 |
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| Symbol | nikD |
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| ID | 5587531 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli E24377A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009801 |
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| Strand | + |
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| Start bp | 3934827 |
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| End bp | 3935591 |
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| Gene Length | 765 bp |
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| Protein Length | 254 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640927585 |
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| Product | nickel transporter ATP-binding protein NikD |
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| Protein accession | YP_001464946 |
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| Protein GI | 157155896 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component |
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| TIGRFAM ID | [TIGR02770] nickel import ATP-binding protein NikD |
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Plasmid Coverage information |
| Num covering plasmid clones | 38 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCCGCAAC AGATTGAACT ACGTAATATC GCGCTACAGG CCGCGCAGCC GCTGGTACAC
GGTGTATCGT TAACCCTGCA ACGCGGGCGC GTGCTGGCGT TAGTCGGCGG TAGCGGCAGC
GGGAAATCAT TAACCTGCGC CGCGACGCTG GGCATTTTGC CCGCTGGCGT TCGCCAGACG
GCGGGGGAAA TTTTAGCCGA TGGCAAACCG GTTTCGCCTT GCGCCCTGCG CGGCATCAAA
ATTGCCACCA TCATGCAGAA CCCGCGCAGC GCCTTTAATC CACTGCACAC CATGCACACC
CACGCGCGGG AAACCTGCCT GGCGTTAGGG AAACCCGCCG ATGACGCTAC GCTTACCGCT
GCCATAGAAG CGGTGGGGCT GGAAAACGCC GCGCGCGTGC TGAAGCTGTA CCCGTTCGAG
ATGAGCGGCG GCATGTTGCA GCGCATGATG ATTGCGATGG CGGTGCTGTG TGAATCACCG
TTTATCATCG CCGATGAACC GACCACCGAC CTCGACGTGG TAGCACAGGC GCGCATCCTC
GATCTGCTGG AAAGCATTAT GCAAAAACAA GCGCCGGGAA TGCTGCTGGT CACCCATGAT
ATGGGCGTTG TGGCGCGTCT GGCGGATGAC GTGGCGGTGA TGTCACAAGG TAAAATTGTC
GAACAGGGCG ATGTAGAAAC GCTGTTTAAC GCCCCCAAAC ATACGGTGAC GCGCAGCCTG
GTTTCCGCTC ATCTCGCCCT CTACGGTATG GAGCTGGCAT CATGA
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| Protein sequence | MPQQIELRNI ALQAAQPLVH GVSLTLQRGR VLALVGGSGS GKSLTCAATL GILPAGVRQT
AGEILADGKP VSPCALRGIK IATIMQNPRS AFNPLHTMHT HARETCLALG KPADDATLTA
AIEAVGLENA ARVLKLYPFE MSGGMLQRMM IAMAVLCESP FIIADEPTTD LDVVAQARIL
DLLESIMQKQ APGMLLVTHD MGVVARLADD VAVMSQGKIV EQGDVETLFN APKHTVTRSL
VSAHLALYGM ELAS
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