| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcE24377A_3182 |
|---|
| Symbol | epaR |
|---|
| ID | 5586533 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli E24377A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009801 |
|---|
| Strand | - |
|---|
| Start bp | 3198009 |
|---|
| End bp | 3198776 |
|---|
| Gene Length | 768 bp |
|---|
| Protein Length | 255 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 640926822 |
|---|
| Product | type III secretion apparatus protein EpaR |
|---|
| Protein accession | YP_001464195 |
|---|
| Protein GI | 157158728 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4791] Type III secretory pathway, component EscT |
|---|
| TIGRFAM ID | [TIGR01401] type III secretion protein SpaR/YscT/HrcT |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 43 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGGGAGG CGATACTCTA TCAGTTGCAT AGTCTGCTGG CTGCTACAGC GCTCGGTTTT
TGCCGATTGG CACCAACTTT CTATTTGTTA CCATTTTTCG CCAGTGGGAA TATACCAACA
GTAGTTCGTC ACCCAATAAT AATAGTGGTA TCATGTGCAT TAGTTCAGCA TTACCACTAT
GAATTATTGA ACTTAAATGA AATCGATATT GCTTTGTTCG CTGCCAGAGA AATTATCATA
GGGCTGTTTA TTGCATGCTT ATTAGCATCC CCGTTTTGGA TTTTCCTTGC TATAGGTAGC
TTTATCGATA ACCAACGCGG TGCAACATTA AGTAGTACTT TGGATCCGGC TACAGGTGTC
GATACCTCGG AATTAGCAAG ATTATTTAAC CTTTTCTCTG CTGCGGTTTA TCTTACTAAA
GGTGGAATGA ACTTTATTCT GGAAACTCTT TGGCAAAGCC ATAATTTATG GCCTTCAGGC
AATTTTAATT TTCCTAAATT AGAGCCTTTA TTCTCATATA TTAATAACAT AATGACTCAT
ACTATCGTTT ACGCAAGCCC CGTGATTGCC GTTATGCTGG GCGGTGAGGC TGTCCTGGGA
TTGCTGGCAT GTTATGCTTC ACAACTAAAT GCTTTTGCCA TTTCACTGAC TGTCAAAAGT
GCGCTGGCAT TTTTAATATT AATTATTTAT TTTGCCCCAA TACTGGCTGA ACGAGTAATG
CCGTTATCCT TTTTCCCAGA ACAATTGCAA CTATACATTG AGAAATAG
|
|---|
| Protein sequence | MGEAILYQLH SLLAATALGF CRLAPTFYLL PFFASGNIPT VVRHPIIIVV SCALVQHYHY
ELLNLNEIDI ALFAAREIII GLFIACLLAS PFWIFLAIGS FIDNQRGATL SSTLDPATGV
DTSELARLFN LFSAAVYLTK GGMNFILETL WQSHNLWPSG NFNFPKLEPL FSYINNIMTH
TIVYASPVIA VMLGGEAVLG LLACYASQLN AFAISLTVKS ALAFLILIIY FAPILAERVM
PLSFFPEQLQ LYIEK
|
|---|
| |