| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcE24377A_3046 |
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| Symbol | truD |
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| ID | 5586518 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli E24377A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009801 |
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| Strand | - |
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| Start bp | 3049025 |
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| End bp | 3050074 |
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| Gene Length | 1050 bp |
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| Protein Length | 349 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640926692 |
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| Product | tRNA pseudouridine synthase D |
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| Protein accession | YP_001464068 |
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| Protein GI | 157155259 |
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| COG category | [S] Function unknown |
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| COG ID | [COG0585] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR00094] tRNA pseudouridine synthase, TruD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.538175 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTGAGT TTGATAATCT CACTTACCTC CACGGTAAAC CGCAAGGCAC CGGGCTGCTG
AAAGCCAATC CGGAAGACTT TGTGGTGGTG GAAGATTTGG GCTTTGAGCC TGATGGTGAA
GGTGAGCATA TTCTGGTTAG AATCCTCAAA AACGGCTGCA ATACCCGTTT TGTGGCGGAT
GCACTGGCGA AATTCCTGAA AATTCATGCC CGTGAAGTCA GCTTCGCTGG GCAAAAAGAC
AAACATGCTG TTACGGAACA GTGGTTATGC GCTCGCGTGC CAGGCAAGGA AATGCCCGAT
CTGAGCGCCT TTCAACTGGA AGGCTGCCAG GTGCTGGAGT ATGCGCGGCA CAAGCGCAAG
CTGCGTTTAG GCGCGCTGAA AGGTAACGCC TTTACCCTGG TTCTGCGCGA AGTGAGCAAT
CGCGATGACG TTGAACAACG TCTGATCGAT ATTTGCGTAA AAGGTGTACC GAACTACTTC
GGTGCCCAAC GTTTTGGGAT TGGCGGTAGC AACTTGCAGG GGGCGCAGCG CTGGGCGCAA
ACCAATACTC CGGTGCGCGA TCGCAATAAA CGGAGTTTTT GGTTGTCGGC AGCCCGCAGT
GCGTTGTTTA ATCAGATTGT TGCTGAGCGC CTCAAAAAAG CAGACGTTAA TCAAGTTGTT
GACGGCGATG CGCTACAATT AGCCGGACGT GGTAGCTGGT TTGTCGCAAC CACCGAAGAA
CTGGCGGAAT TACAGCGTCG CGTCAACGAT AAAGAGCTGA TGATAACCGC CGCATTGCCG
GGCAGTGGCG AATGGGGAAC TCAGCGTGAA GCGCTGGCAT TCGAACAAGC AGCTGTCGCC
GCAGAAACTG AATTACAAGC TTTACTGGTG CGCGAAAAAG TTGAAGCCGC GCGCAGAGCG
ATGCTGCTGT ATCCGCAACA ATTAAGCTGG AATTGGTGGG ATGACGTCAC CGTAGAGATC
CGTTTCTGGC TTCCGGCGGG TAGTTTTGCA ACCAGCGTTG TCAGGGAACT TATCAACACA
ACAGGTGATT ATGCGCATAT TGCTGAGTAA
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| Protein sequence | MIEFDNLTYL HGKPQGTGLL KANPEDFVVV EDLGFEPDGE GEHILVRILK NGCNTRFVAD
ALAKFLKIHA REVSFAGQKD KHAVTEQWLC ARVPGKEMPD LSAFQLEGCQ VLEYARHKRK
LRLGALKGNA FTLVLREVSN RDDVEQRLID ICVKGVPNYF GAQRFGIGGS NLQGAQRWAQ
TNTPVRDRNK RSFWLSAARS ALFNQIVAER LKKADVNQVV DGDALQLAGR GSWFVATTEE
LAELQRRVND KELMITAALP GSGEWGTQRE ALAFEQAAVA AETELQALLV REKVEAARRA
MLLYPQQLSW NWWDDVTVEI RFWLPAGSFA TSVVRELINT TGDYAHIAE
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