Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcE24377A_1246 |
Symbol | potD |
ID | 5590423 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli E24377A |
Kingdom | Bacteria |
Replicon accession | NC_009801 |
Strand | - |
Start bp | 1259241 |
End bp | 1260287 |
Gene Length | 1047 bp |
Protein Length | 348 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640924944 |
Product | spermidine/putrescine ABC transporter periplasmic substrate-binding protein |
Protein accession | YP_001462356 |
Protein GI | 157158028 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.178471 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAAAT GGTCACGCCA CCTGCTCGCG GCGGGTGCTC TGGCACTGGG CATGAGCGCC GCTCACGCCG ATGACAACAA CACGCTGTAT TTCTACAACT GGACCGAGTA CGTGCCGCCA GGACTGCTTG AACAGTTCAC CAAAGAAACC GGTATTAAGG TTATCTATTC GACTTACGAG TCGAACGAAA CCATGTATGC CAAGCTGAAA ACGTACAAAG ACGGTGCCTA TGACCTGGTG GTTCCTTCAA CCTATTACGT CGATAAAATG CGTAAAGAAG GGATGATCCA GAAGATCGAC AAGTCGAAGT TAACGAACTT CAGCAATCTC GATCCAGACA TGCTCAACAA GCCTTTTGAC CCGAATAACG ACTACTCCAT TCCGTATATC TGGGGTGCGA CGGCGATTGG TGTTAACGGT GATGGGGTGG ATCCGAAATC TGTCACCAGC TGGGCCGATC TGTGGAAGCC AGAGTACAAA GGCAGCCTGC TGCTGACCGA CGATGCCCGT GAAGTGTTCC AGATGGCGCT GCGTAAGCTG GGCTACTCCG GTAACACCAC CGATCCGAAA GAGATTGAAG CTGCATATAA CGAGCTGAAA AAACTGATGC CAAACGTCGC AGCGTTTAAC TCCGATAACC CGGCTAACCC GTACATGGAA GGCGAAGTTA ACCTCGGCAT GATCTGGAAC GGTTCTGCTT TCGTTGCACG CCAGGCGGGT ACGCCAATTG ACGTGGTGTG GCCGAAAGAA GGCGGCATTT TCTGGATGGA CAGCCTGGCG ATCCCGGCAA ATGCCAAAAA CAAAGAAGGC GCGCTGAAAT TGATCAACTT CCTGCTGCGC CCGGATGTGG CAAAACAGGT TGCTGAAACT ATCGGTTATC CAACGCCAAA CCTTGCGGCG CGTAAGCTGT TAAGCCCGGA AGTGGCGAAC GATAAAACGC TCTACCCGGA TGCTGAAACC ATTAAAAATG GTGAATGGCA GAATGACGTT GGCGCAGCCA GCAGCATTTA TGAAGAGTAT TATCAGAAGC TGAAAGCAGG ACGTTAA
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Protein sequence | MKKWSRHLLA AGALALGMSA AHADDNNTLY FYNWTEYVPP GLLEQFTKET GIKVIYSTYE SNETMYAKLK TYKDGAYDLV VPSTYYVDKM RKEGMIQKID KSKLTNFSNL DPDMLNKPFD PNNDYSIPYI WGATAIGVNG DGVDPKSVTS WADLWKPEYK GSLLLTDDAR EVFQMALRKL GYSGNTTDPK EIEAAYNELK KLMPNVAAFN SDNPANPYME GEVNLGMIWN GSAFVARQAG TPIDVVWPKE GGIFWMDSLA IPANAKNKEG ALKLINFLLR PDVAKQVAET IGYPTPNLAA RKLLSPEVAN DKTLYPDAET IKNGEWQNDV GAASSIYEEY YQKLKAGR
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