| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcE24377A_1159 |
|---|
| Symbol | csgD |
|---|
| ID | 5590727 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli E24377A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009801 |
|---|
| Strand | - |
|---|
| Start bp | 1180011 |
|---|
| End bp | 1180661 |
|---|
| Gene Length | 651 bp |
|---|
| Protein Length | 216 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 640924859 |
|---|
| Product | DNA-binding transcriptional regulator CsgD |
|---|
| Protein accession | YP_001462271 |
|---|
| Protein GI | 157155649 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTAATG AAGTCCATAG TATTCATGGT CATACATTAT TGTTGATCAC TAAACCGTCT
TTGCAAGCGA CAGCTCTCTT GCAGCACCTT AAACAATCGC TGGCAATTAC AGGAAAATTA
CATAATATTC AACGTTCTCT GGACGATATA TCTTCAGGCT CTATTATTCT TCTGGATATG
ATGGAAGCAG ATAAAAAGCT TATCCATTAT TGGCAGGATA CTTTGAGCAG GAAAAACAAC
AATATCAAAA TATTGTTGCT AAATACGCCT GAAGATTACC CGTACCGCGA CATTGAAAAC
TGGCCTCATA TCAACGGCGT TTTTTATGCC ATGGAGGATC AAGAACGTGT TGTCAATGGG
TTGCAAGGCG TCCTGCGCGG CGAATGCTAC TTTACGCAAA AGCTTGCCAG TTACCTGATT
ACACATTCTG GTAACTATCG TTATAACAGC ACGGAATCAG CCCTCCTTAC TCATCGGGAA
AAAGAGATCC TGAATAAGCT GCGTATCGGC GCGTCTAATA ACGAGATCGC TCGTTCGTTG
TTCATCAGCG AAAATACGGT TAAAACGCAT CTTTATAATC TTTTCAAGAA GATAGCCGTA
AAAAACCGGA CACAAGCGGT TTCCTGGGCA AACGATAACC TCAGGCGATA A
|
|---|
| Protein sequence | MFNEVHSIHG HTLLLITKPS LQATALLQHL KQSLAITGKL HNIQRSLDDI SSGSIILLDM
MEADKKLIHY WQDTLSRKNN NIKILLLNTP EDYPYRDIEN WPHINGVFYA MEDQERVVNG
LQGVLRGECY FTQKLASYLI THSGNYRYNS TESALLTHRE KEILNKLRIG ASNNEIARSL
FISENTVKTH LYNLFKKIAV KNRTQAVSWA NDNLRR
|
|---|
| |