| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcDH1_2918 |
|---|
| Symbol | |
|---|
| ID | 0 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli DH1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | CP001637 |
|---|
| Strand | + |
|---|
| Start bp | 3128941 |
|---|
| End bp | 3131397 |
|---|
| Gene Length | 2457 bp |
|---|
| Protein Length | 818 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | |
|---|
| Product | fimbrial biogenesis outer membrane usher protein |
|---|
| Protein accession | ACX40551 |
|---|
| Protein GI | 260450129 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.528881 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACACCG TGAATATTTA TCGACTCTCT TTTGTATCCT GCCTGGTCAT GGCGATGCCT
TGCGCAATGG CGGTCGAATT CAATCTGAAT GTTCTCGATA AATCAATGCG CGACCGCATT
GATATTTCAT TATTAAAGGA AAAAGGAGTC ATTGCTCCCG GTGAATATTT TGTTAGCGTT
GCGGTGAATA ACAACAAAAT CAGTAATGGG CAAAAAATTA ACTGGCAAAA AAAGGGTGAC
AAAACCATTC CATGCATCAA TGATTCACTG GTCGATAAAT TTGGTTTAAA ACCAGATATC
CGTCAGTCCT TGCCACAGAT AGATCGGTGT ATTGATTTCA GTTCCCGACC TGAAATGCTC
TTCAATTTCG ATCAAGCCAA TCAGCAACTG AATATTAGTA TTCCGCAAGC CTGGCTGGCG
TGGCACTCAG AAAACTGGGC TCCCCCCTCT ACATGGAAAG AAGGTGTTGC CGGTGTCCTG
ATGGATTACA ACTTGTTTGC CAGCAGCTAC CGCCCACAGG ACGGCAGCAG CAGCACTAAC
CTGAATGCCT ACGGTACCGC CGGAATTAAC GCCGGGGCAT GGCGCTTACG CAGTGATTAC
CAGCTTAATA AGACCGATAG CGAAGATAAC CATGACCAGT CAGGCGGAAT ATCGCGCACC
TATCTTTTTC GTCCATTACC GCAATTAGGC TCTAAGTTAA CCCTCGGCGA AACCGATTTC
AGTTCCAATA TTTTCGATGG TTTTTCTTAT ACCGGCGCGG CACTGGCGAG TGACGATCGA
ATGTTACCGT GGGAGCTGCG TGGCTACGCC CCACAAATTA GCGGTATTGC ACAGACCAAT
GCCACGGTGA CGATCAGTCA ATCAGGCCGC GTCATTTACC AGAAAAAAGT CCCGCCAGGC
CCGTTTATTA TTGATGACCT CAATCAGTCT GTTCAGGGCA CGCTGGATGT CAAAGTGACG
GAAGAAGATG GTCGGGTGAA CAATTTCCAG GTTTCGGCAG CATCGACGCC CTTCCTGACT
CGCCAGGGAC AGGTTCGCTA TAAATTGGCC GCGGGTCAGC CACGGCCTTC CATGTCACAT
CAAACTGAAA ATGAAACCTT TTTTAGCAAT GAAGTTTCCT GGGGGATGCT CTCAAACACC
TCGCTGTACG GCGGCCTGCT GATTTCTGAT GATGACTACC ATTCTGCCGC AATGGGTATC
GGGCAAAATA TGCTGTGGCT TGGCGCACTG TCCTTTGATG TCACCTGGGC CAGTAGCCAT
TTTGATACTC AGCAGGACGA GCGGGGCTTA AGCTACCGTT TTAATTACAG CAAACAAGTG
GATGCCACCA ACAGCACGAT TTCGCTCGCC GCTTATCGCT TCTCAGATCG TCATTTTCAC
AGCTACGCCA ACTATCTGGA TCACAAATAC AACGACAGCG ATGCGCAGGA CGAAAAACAG
ACGATCAGCT TATCCGTGGG CCAACCGATT ACCCCACTAA ACCTCAATCT TTACGCCAAC
CTGCTACATC AAACCTGGTG GAATGCAGAC GCCTCCACGA CCGCCAACAT CACAGCAGGT
TTTAATGTTG ATATTGGTGA CTGGAGAGAT ATCTCGATTT CGACGTCATT CAATACGACC
CACTACGAAG ATAAAGATCG CGACAACCAG ATTTATCTGT CGATTTCGCT CCCCTTCGGT
AACGGTGGTC GGGTTGGCTA TGACATGCAA AACAGTAGCC ACAGCACCAT ACACCGCATG
TCGTGGAACG ATACGCTGGA TGAACGTAAT AGCTGGGGCA TGTCTGCCGG ACTGCAATCC
GATCGTCCGG ACAATGGAGC CCAGGTGAGC GGTAACTATC AGCACCTGAG TTCAGCGGGT
GAGTGGGATA TTTCTGGTAC CTATGCCGCC AGTGATTACA GTTCCGTCAG CAGCAGCTGG
AGCGGTTCTT TCACCGCAAC CCAATATGGT GCAGCATTTC ATCGCCGCAG CTCCACCAAT
GAACCACGCC TGATGGTCAG CACCGATGGC GTGGCAGATA TTCCGGTTCA GGGCAATCTC
GACTACACCA ACCATTTTGG CATTGCGGTG GTGCCGTTGA TTTCCAGTTA CCAGCCTTCC
ACCGTGGCGG TGAACATGAA TGACTTACCC GACGGCGTAA CAGTTGCAGA AAACGTCATC
AAGGAAACAT GGATTGAAGG CGCGATAGGT TACAAATCAC TGGCTTCCCG TTCCGGTAAA
GACGTTAACG TCATCATACG CAACGCCAGC GGTCAGTTCC CTCCCCTCGG TGCGGATATC
CGCCAGGATG ACAGCGGCAT TAGCGTGGGT ATGGTTGGCG AGGAAGGACA TGCCTGGTTA
AGCGGTGTCG CTGAAAATCA ACTGTTTACC GTGGTCTGGG GTGAGCAAAG CTGCATTATT
CATCTGCCAG AACGTCTGGA AGACACGACC AAACGCCTGA TTTTACCTTG TCATTAA
|
|---|
| Protein sequence | MDTVNIYRLS FVSCLVMAMP CAMAVEFNLN VLDKSMRDRI DISLLKEKGV IAPGEYFVSV
AVNNNKISNG QKINWQKKGD KTIPCINDSL VDKFGLKPDI RQSLPQIDRC IDFSSRPEML
FNFDQANQQL NISIPQAWLA WHSENWAPPS TWKEGVAGVL MDYNLFASSY RPQDGSSSTN
LNAYGTAGIN AGAWRLRSDY QLNKTDSEDN HDQSGGISRT YLFRPLPQLG SKLTLGETDF
SSNIFDGFSY TGAALASDDR MLPWELRGYA PQISGIAQTN ATVTISQSGR VIYQKKVPPG
PFIIDDLNQS VQGTLDVKVT EEDGRVNNFQ VSAASTPFLT RQGQVRYKLA AGQPRPSMSH
QTENETFFSN EVSWGMLSNT SLYGGLLISD DDYHSAAMGI GQNMLWLGAL SFDVTWASSH
FDTQQDERGL SYRFNYSKQV DATNSTISLA AYRFSDRHFH SYANYLDHKY NDSDAQDEKQ
TISLSVGQPI TPLNLNLYAN LLHQTWWNAD ASTTANITAG FNVDIGDWRD ISISTSFNTT
HYEDKDRDNQ IYLSISLPFG NGGRVGYDMQ NSSHSTIHRM SWNDTLDERN SWGMSAGLQS
DRPDNGAQVS GNYQHLSSAG EWDISGTYAA SDYSSVSSSW SGSFTATQYG AAFHRRSSTN
EPRLMVSTDG VADIPVQGNL DYTNHFGIAV VPLISSYQPS TVAVNMNDLP DGVTVAENVI
KETWIEGAIG YKSLASRSGK DVNVIIRNAS GQFPPLGADI RQDDSGISVG MVGEEGHAWL
SGVAENQLFT VVWGEQSCII HLPERLEDTT KRLILPCH
|
|---|
| |