Gene EcDH1_2533 details

Gene Information

• Locus tag: EcDH1_2533
• ID: 0
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Escherichia coli DH1
• Kingdom: Bacteria
• Replicon accession: CP001637
• Strand: +
• Start bp: 2705727
• End bp: 2709221
• Gene Length: 3495 bp
• Protein Length: 1164 aa
• Translation table: 11
• GC content: 55%
• Product: transcription-repair coupling factor
• Protein accession: ACX40169
• Protein GI: 260449747

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.00875995
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCCCCAT ATGTTGAGGC ATATCCTAAC GAGAATCTGA CAACCGTTAT GCCTGAACAA 
TATCGTTATA CGCTGCCCGT CAAAGCGGGT GAGCAGCGTC TGCTGGGCGA GTTAACCGGC 
GCAGCCTGTG CAACGCTGGT AGCGGAAATT GCCGAACGTC ACGCCGGTCC GGTGGTACTC 
ATTGCACCAG ATATGCAAAA TGCTCTGCGT TTGCATGATG AAATCAGCCA GTTTACCGAT 
CAAATGGTGA TGAATCTGGC GGACTGGGAA ACTCTTCCCT ACGACAGTTT TTCGCCTCAT 
CAGGACATTA TCTCCTCGCG CCTTTCCACC CTTTACCAGC TACCGACGAT GCAGCGTGGC 
GTACTGATTG TTCCGGTGAA TACGCTTATG CAGCGCGTTT GCCCACACAG TTTTCTCCAC 
GGTCATGCGC TGGTGATGAA AAAAGGTCAG CGCCTGTCAC GAGATGCATT ACGAACCCAA 
CTGGACAGCG CCGGTTATCG CCATGTTGAC CAGGTGATGG AGCACGGCGA ATACGCCACG 
CGCGGCGCGT TGCTGGATCT CTTCCCGATG GGGAGTGAGC TGCCTTATCG TCTTGATTTC 
TTTGATGATG AAATCGACAG CCTGCGGGTG TTTGACGTCG ACAGCCAGCG CACGCTGGAG 
GAAGTAGAAG CGATCAATCT GCTGCCCGCG CACGAATTTC CGACCGATAA AGCGGCAATT 
GAACTGTTCC GCAGCCAGTG GCGCGATACC TTCGAAGTGA AGCGCGATCC AGAACATATT 
TACCAGCAAG TGAGTAAAGG CACATTACCT GCCGGGATCG AGTACTGGCA GCCATTGTTC 
TTCAGCGAAC CACTGCCGCC GCTGTTCAGT TATTTCCCTG CCAATACCTT GCTCGTGAAT 
ACTGGCGATC TGGAAACCAG TGCCGAACGT TTCCAGGCTG ACACGCTGGC GCGTTTTGAG 
AATCGCGGCG TCGATCCGAT GCGCCCGCTG TTGCCACCAC AATCGCTCTG GCTGCGGGTG 
GACGAGCTCT TCTCAGAGCT GAAAAACTGG CCCCGGGTGC AGCTAAAAAC TGAACATTTA 
CCGACAAAAG CCGCGAATGC CAATTTAGGT TTCCAGAAAC TGCCAGACCT GGCCGTTCAG 
GCACAACAAA AAGCGCCGCT GGATGCGCTG CGTAAGTTCC TCGAGACTTT CGACGGTCCG 
GTGGTGTTCT CGGTAGAAAG TGAAGGTCGC CGTGAAGCGC TGGGTGAACT GCTCGCACGA 
ATTAAAATTG CTCCGCAACG CATTATGCGT CTTGATGAAG CCAGCGACCG TGGGCGTTAT 
CTGATGATTG GCGCTGCCGA ACATGGTTTT GTCGATACGG TGCGTAATCT GGCGCTGATT 
TGCGAAAGCG ATCTGCTCGG TGAACGCGTT GCCCGTCGTC GTCAGGATTC TCGCCGCACC 
ATCAACCCCG ATACACTGAT CCGTAACCTT GCGGAACTGC ATATTGGTCA GCCGGTGGTC 
CATCTGGAGC ACGGCGTCGG TCGTTATGCC GGAATGACCA CGCTGGAAGC GGGTGGCATT 
ACTGGCGAGT ATCTGATGCT CACCTATGCC AACGACGCCA AACTGTATGT TCCGGTGTCG 
TCACTGCATC TGATTAGCCG TTACGCAGGT GGCGCGGAAG AAAACGCCCC GCTGCATAAA 
CTTGGCGGCG ATGCGTGGTC ACGCGCGCGG CAGAAAGCGG CGGAAAAAGT GCGTGATGTG 
GCGGCGGAAT TGCTGGATAT CTACGCGCAA CGCGCCGCCA AAGAGGGCTT CGCGTTTAAA 
CACGATCGTG AGCAGTATCA GTTGTTCTGC GACAGCTTCC CGTTTGAAAC CACGCCGGAT 
CAGGCGCAGG CCATTAATGC GGTACTTAGC GACATGTGTC AGCCGCTGGC AATGGATCGT 
CTGGTGTGCG GCGATGTTGG CTTTGGTAAA ACAGAAGTGG CGATGCGCGC AGCTTTCCTG 
GCAGTAGATA ACCACAAGCA GGTGGCGGTG CTGGTGCCTA CCACCCTTCT CGCGCAGCAG 
CATTACGACA ACTTCCGCGA CCGTTTCGCC AACTGGCCGG TACGTATCGA AATGATCTCC 
CGTTTCCGCA GCGCCAAAGA GCAGACGCAA ATCCTTGCGG AAGTGGCGGA AGGGAAAATC 
GATATTCTGA TCGGTACGCA CAAACTGCTG CAAAGTGACG TCAAGTTTAA AGATTTAGGC 
CTGCTGATTG TCGATGAAGA ACACCGCTTC GGGGTGCGTC ATAAAGAGCG CATTAAAGCG 
ATGCGCGCGA ACGTGGATAT TCTGACGCTT ACTGCAACGC CGATCCCACG TACGCTGAAT 
ATGGCAATGA GCGGAATGCG TGACCTGTCG ATTATCGCCA CGCCGCCCGC CCGTCGTCTG 
GCAGTTAAAA CCTTTGTCCG TGAGTATGAC AGCATGGTGG TCCGGGAGGC GATCCTGCGT 
GAAATTTTGC GCGGAGGACA GGTTTATTAT CTCTACAATG ATGTGGAAAA CATTCAGAAA 
GCCGCCGAAC GGCTGGCAGA ACTGGTGCCA GAAGCGCGGA TCGCCATCGG TCACGGGCAG 
ATGCGCGAGC GCGAACTGGA ACGGGTGATG AATGATTTCC ATCATCAACG TTTCAACGTG 
CTGGTTTGTA CAACCATTAT CGAAACCGGG ATCGACATCC CGACAGCCAA CACTATTATC 
ATTGAACGCG CGGATCACTT CGGTCTGGCG CAGCTGCACC AGTTACGCGG TCGCGTCGGA 
CGTTCGCATC ATCAGGCATA TGCATGGTTG CTGACACCGC ATCCAAAAGC GATGACTACC 
GATGCACAAA AACGTCTTGA AGCAATTGCC TCGCTGGAAG ATCTCGGGGC AGGTTTTGCG 
CTGGCAACGC ACGATCTGGA GATTCGCGGC GCGGGTGAAC TGCTTGGCGA AGAACAAAGC 
GGCTCAATGG AAACCATCGG TTTCTCGCTG TATATGGAGT TGCTGGAAAA CGCCGTCGAT 
GCACTGAAAG CCGGACGCGA GCCGTCGCTG GAAGATCTCA CCAGCCAGCA AACAGAAGTC 
GAGCTGCGGA TGCCGTCGCT ATTGCCAGAT GATTTCATCC CTGACGTGAA CACGCGTCTG 
TCGTTCTACA AACGTATTGC CAGCGCCAAA ACGGAAAACG AACTGGAAGA GATCAAAGTC 
GAGCTTATCG ATCGCTTCGG CCTGCTGCCA GATCCGGCGC GTACCCTGCT GGATATTGCC 
CGTCTGCGCC AGCAAGCGCA GAAACTGGGG ATCAGGAAGC TGGAAGGTAA TGAGAAAGGC 
GGGGTGATCG AATTTGCCGA GAAGAATCAC GTTAATCCGG CCTGGTTGAT TGGTTTGCTG 
CAAAAACAGC CGCAGCATTA CCGCCTTGAT GGTCCGACGC GCCTGAAATT TATTCAGGAT 
TTGAGTGAGC GGAAAACGCG TATCGAATGG GTACGCCAGT TTATGCGTGA ACTGGAAGAG 
AACGCGATCG CTTAA 

 

Protein sequence

MPPYVEAYPN ENLTTVMPEQ YRYTLPVKAG EQRLLGELTG AACATLVAEI AERHAGPVVL 
IAPDMQNALR LHDEISQFTD QMVMNLADWE TLPYDSFSPH QDIISSRLST LYQLPTMQRG 
VLIVPVNTLM QRVCPHSFLH GHALVMKKGQ RLSRDALRTQ LDSAGYRHVD QVMEHGEYAT 
RGALLDLFPM GSELPYRLDF FDDEIDSLRV FDVDSQRTLE EVEAINLLPA HEFPTDKAAI 
ELFRSQWRDT FEVKRDPEHI YQQVSKGTLP AGIEYWQPLF FSEPLPPLFS YFPANTLLVN 
TGDLETSAER FQADTLARFE NRGVDPMRPL LPPQSLWLRV DELFSELKNW PRVQLKTEHL 
PTKAANANLG FQKLPDLAVQ AQQKAPLDAL RKFLETFDGP VVFSVESEGR REALGELLAR 
IKIAPQRIMR LDEASDRGRY LMIGAAEHGF VDTVRNLALI CESDLLGERV ARRRQDSRRT 
INPDTLIRNL AELHIGQPVV HLEHGVGRYA GMTTLEAGGI TGEYLMLTYA NDAKLYVPVS 
SLHLISRYAG GAEENAPLHK LGGDAWSRAR QKAAEKVRDV AAELLDIYAQ RAAKEGFAFK 
HDREQYQLFC DSFPFETTPD QAQAINAVLS DMCQPLAMDR LVCGDVGFGK TEVAMRAAFL 
AVDNHKQVAV LVPTTLLAQQ HYDNFRDRFA NWPVRIEMIS RFRSAKEQTQ ILAEVAEGKI 
DILIGTHKLL QSDVKFKDLG LLIVDEEHRF GVRHKERIKA MRANVDILTL TATPIPRTLN 
MAMSGMRDLS IIATPPARRL AVKTFVREYD SMVVREAILR EILRGGQVYY LYNDVENIQK 
AAERLAELVP EARIAIGHGQ MRERELERVM NDFHHQRFNV LVCTTIIETG IDIPTANTII 
IERADHFGLA QLHQLRGRVG RSHHQAYAWL LTPHPKAMTT DAQKRLEAIA SLEDLGAGFA 
LATHDLEIRG AGELLGEEQS GSMETIGFSL YMELLENAVD ALKAGREPSL EDLTSQQTEV 
ELRMPSLLPD DFIPDVNTRL SFYKRIASAK TENELEEIKV ELIDRFGLLP DPARTLLDIA 
RLRQQAQKLG IRKLEGNEKG GVIEFAEKNH VNPAWLIGLL QKQPQHYRLD GPTRLKFIQD 
LSERKTRIEW VRQFMRELEE NAIA