Gene EcDH1_0943 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcDH1_0943 
Symbol 
ID
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli DH1 
KingdomBacteria 
Replicon accessionCP001637 
Strand
Start bp1012459 
End bp1013508 
Gene Length1050 bp 
Protein Length349 aa 
Translation table11 
GC content52% 
IMG OID 
ProducttRNA pseudouridine synthase D TruD 
Protein accessionACX38626 
Protein GI260448204 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value0.336475 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATTGAGT TTGATAATCT CACTTACCTC CACGGTAAAC CGCAAGGCAC CGGGCTGCTG 
AAAGCCAATC CGGAAGACTT TGTGGTGGTG GAAGATTTGG GCTTTGAGCC TGATGGTGAA
GGTGAGCATA TTCTGGTTAG AATCCTCAAA ACCGGCTGCA ATACCCGTTT TGTGGCGGAT
GCACTGGCGA AATTCCTGAA AATTCATGCC CGTGAAGTCA GCTTCGCTGG GCAAAAAGAC
AAACATGCTG TTACGGAACA GTGGTTATGC GCTCGCGTGC CGGGCAAGGA AATGCCCGAT
CTGAGCGCCT TTCAACTGGA AGGCTGCCAG GTGCTGGAGT ATGCGCGGCA CAAGCGCAAG
CTGCGTTTAG GCGCGCTGAA AGGTAACGCC TTTACCCTGG TTCTGCGCGA AGTGAGCAAT
CGCGATGACG TTGAACAACG TCTGATCGAT ATTTGCGTAA AAGGTGTACC GAACTACTTC
GGTGCCCAAC GTTTTGGGAT TGGCGGTAGC AACTTGCAGG GGGCGCAGCG CTGGGCGCAA
ACCAATACTC CGGTGCGCGA TCGCAATAAA CGGAGTTTTT GGTTGTCGGC AGCCCGCAGT
GCGTTGTTTA ATCAGATTGT TGCTGAGCGC CTCAAAAAAG CAGACGTTAA TCAAGTTGTT
GACGGCGATG CGCTACAATT AGCCGGACGT GGTAGCTGGT TTGTCGCAAC CACCGAAGAA
CTGGCGGAAT TACAGCGTCG CGTCAACGAT AAAGAGTTGA TGATAACCGC CGCATTGCCA
GGCAGTGGCG AATGGGGAAC TCAGCGTGAA GCGCTGGCAT TCGAACAAGC AGCTGTCGCC
GCAGAAACTG AATTACAAGC TTTACTGGTG CGCGAAAAAG TTGAAGCCGC GCGCAGAGCG
ATGCTGCTGT ATCCGCAACA ATTAAGCTGG AATTGGTGGG ATGACGTCAC CGTAGAGATC
CGTTTCTGGC TTCCGGCGGG TAGTTTTGCA ACCAGCGTTG TCAGGGAACT TATCAACACA
ACAGGTGATT ATGCGCATAT TGCTGAGTAA
 
Protein sequence
MIEFDNLTYL HGKPQGTGLL KANPEDFVVV EDLGFEPDGE GEHILVRILK TGCNTRFVAD 
ALAKFLKIHA REVSFAGQKD KHAVTEQWLC ARVPGKEMPD LSAFQLEGCQ VLEYARHKRK
LRLGALKGNA FTLVLREVSN RDDVEQRLID ICVKGVPNYF GAQRFGIGGS NLQGAQRWAQ
TNTPVRDRNK RSFWLSAARS ALFNQIVAER LKKADVNQVV DGDALQLAGR GSWFVATTEE
LAELQRRVND KELMITAALP GSGEWGTQRE ALAFEQAAVA AETELQALLV REKVEAARRA
MLLYPQQLSW NWWDDVTVEI RFWLPAGSFA TSVVRELINT TGDYAHIAE