| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_5053 |
|---|
| Symbol | |
|---|
| ID | 6968057 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli O157:H7 str. EC4115 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011353 |
|---|
| Strand | + |
|---|
| Start bp | 4698078 |
|---|
| End bp | 4699298 |
|---|
| Gene Length | 1221 bp |
|---|
| Protein Length | 406 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 643388731 |
|---|
| Product | type III secretion apparatus protein, YscD/HrpQ family |
|---|
| Protein accession | YP_002273157 |
|---|
| Protein GI | 209399186 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR02500] type III secretion apparatus protein, YscD/HrpQ family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 56 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTATCCT CATATAAAAT AAAACTTCTC AATGGTGCGA TGCGTAATCG GGAATTACAA
CTTCCGATGG GAAACCTAAC GCTAGGTACG GAAGATAACG ATATTGTTTA CTTTCCCCTT
GAACAAGGCC TCAATCAGTT TTTACTTGAT ATACGTGAGG AAGGTGTTTT CCTTTTATCT
CCGGTTGAAT TTTGGATTGA TGGGCAACCC ACGCCCTATG AAGCAGATAA ACCATTACCT
GTCGGAAAGG TTATTGATAT AGCGGGATGT TGCTTCATCA TTGGTGATAT TGACCATTCC
TTGCCATTGT CTGATGTGCC AGAAAGGTTC TCTGCCAAAA GTCGACGCAA AAAACGCCTT
ATCCTGGCGA GCGTGATTGG TGCTACTTTT GCGTTGTCTG GTGCCATCGG CAGTTACGTT
TTGCTTTCCC CAAAAGCTGA ACCCCCAACG TTTACCAGAG CTGATGTATA TCAGCAGCTA
AAAGAAAACA AACTTCATGC AATCACTCTG GTATGGCATG GGAAAAATAT CGCGCTTTAT
GGGCGTTGCG AATCAACCAC GGATTTAACT CCATTTTTTA ATTACCTAAA AGAAAAAAAT
ATTTTTTATT ACAATAATAT CATTTGCAAT AACCAAATCA TATCCGCAAT TAATGATGTC
TTAACGGAAT ACGGTTACAA AGATATCATT ATTACAAAAG GTAATAAGCC TGGATTCTTT
CTGTTATCGG GATACATTCC CCCTTCACCC AAATGGAGCG AGGTTGAAAA TCTGTTACTG
AATACGCCAG GAGTTGCAGG ATGGGAAATA CACAACAACA GTAACAATAA AATCAATGAA
CTGGCATCAG AGTTTAAAAA GAATAAACTA ATAAACTATG TCAATATTTT CAAAAAGAAT
GATGTCATCA TTGTTGCGGG GGAAGTTTCT CAACAGAATG AGAGTAAGAT CCTTGCCATT
ATAAATGCAA TGAACAAAAA TAGTAACGCC AAGATACTCT TTCAGAACAT TCAGCCGTAC
ATTTCAGCAG ATATTTTCCC CGGAAAAATA CTCAGAATCA GCGGTACGAT GAAGAATCCA
ACAATTGCTC TTGATAATGG CACCAGCCTG GGGATTGGTA GCATTCTGAA AGGAGGCTAT
GTCATAGACG CGATTGATCC TAAAGATGGT ATCAACATCT CCCGCCCAGA CGAATATATA
CATATTCCAC TGTCGTATTA A
|
|---|
| Protein sequence | MLSSYKIKLL NGAMRNRELQ LPMGNLTLGT EDNDIVYFPL EQGLNQFLLD IREEGVFLLS
PVEFWIDGQP TPYEADKPLP VGKVIDIAGC CFIIGDIDHS LPLSDVPERF SAKSRRKKRL
ILASVIGATF ALSGAIGSYV LLSPKAEPPT FTRADVYQQL KENKLHAITL VWHGKNIALY
GRCESTTDLT PFFNYLKEKN IFYYNNIICN NQIISAINDV LTEYGYKDII ITKGNKPGFF
LLSGYIPPSP KWSEVENLLL NTPGVAGWEI HNNSNNKINE LASEFKKNKL INYVNIFKKN
DVIIVAGEVS QQNESKILAI INAMNKNSNA KILFQNIQPY ISADIFPGKI LRISGTMKNP
TIALDNGTSL GIGSILKGGY VIDAIDPKDG INISRPDEYI HIPLSY
|
|---|
| |