| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_4819 |
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| Symbol | nikD |
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| ID | 6971934 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli O157:H7 str. EC4115 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011353 |
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| Strand | + |
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| Start bp | 4454697 |
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| End bp | 4455461 |
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| Gene Length | 765 bp |
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| Protein Length | 254 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643388511 |
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| Product | nickel transporter ATP-binding protein NikD |
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| Protein accession | YP_002272939 |
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| Protein GI | 209399073 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component |
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| TIGRFAM ID | [TIGR02770] nickel import ATP-binding protein NikD |
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Plasmid Coverage information |
| Num covering plasmid clones | 49 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 71 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCCGCAAC AGATTGAACT ACGTAATATC GCGCTACAGG CCGCGCAGCC GCTGGTGCAC
GGCGTGTCGT TAACCCTGAA ACGCGGGCGC GTGCTGGCGT TAGTCGGCGG TAGCGGCAGC
GGGAAATCAT TAACCTGCGC CGCGACGCTG GGAATTCTGC CCGCAGGCGT TCGCCAGACG
GCGGGGGAAA TTTTAGCCGA TGGCAAACCG GTTTCTCCCT GCGCCCTGCG CGGCATCAAA
ATTGCCACCA TCATGCAGAA CCCGCGCAGC GCCTTTAATC CACTGCACAC CATGCACACC
CACGCGCGGG AGACGTGCCT GGCGCTGGGG AAACCCGCCG ATGACGCTAC GCTTACCGCT
GCCATAGAAG CGGTGGGGCT GGAAAACGCC GCACGCGTGC TGAAGCTGTA CCCGTTCGAG
ATGAGCGGCG GCATGTTGCA GCGCATGATG ATTGCGATGG CGGTGCTTTG CGAATCACCG
TTTATCATCG CCGATGAACC AACCACCGAC CTCGACGTGG TAGCACAGGC ACGCATTCTC
GATCTGCTGG AAAGCATTAT GCAAAAACAG GCGCCGGGGA TGCTGCTGGT CACCCATGAT
ATGGGCGTGG TGGCGCGTCT GGCGGATGAC GTAGCGGTAA TGTCTGACGG TAAGATTGTC
GAACAGGGCG ATGTCGAAAC GCTGTTTAAC GCCCCCAAAC ATGCGGTAAC GCGCAGCCTG
GTTTCCGCTC ATCTCGCCCT CTACGGTATG GAGCTGGCAT CATGA
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| Protein sequence | MPQQIELRNI ALQAAQPLVH GVSLTLKRGR VLALVGGSGS GKSLTCAATL GILPAGVRQT
AGEILADGKP VSPCALRGIK IATIMQNPRS AFNPLHTMHT HARETCLALG KPADDATLTA
AIEAVGLENA ARVLKLYPFE MSGGMLQRMM IAMAVLCESP FIIADEPTTD LDVVAQARIL
DLLESIMQKQ APGMLLVTHD MGVVARLADD VAVMSDGKIV EQGDVETLFN APKHAVTRSL
VSAHLALYGM ELAS
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