Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | ECH74115_4147 |
Symbol | |
ID | 6967062 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli O157:H7 str. EC4115 |
Kingdom | Bacteria |
Replicon accession | NC_011353 |
Strand | - |
Start bp | 3833628 |
End bp | 3835688 |
Gene Length | 2061 bp |
Protein Length | 686 aa |
Translation table | 11 |
GC content | 37% |
IMG OID | 643387895 |
Product | type III secretion protein, HrcV family |
Protein accession | YP_002272335 |
Protein GI | 209398095 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4789] Type III secretory pathway, component EscV |
TIGRFAM ID | [TIGR01399] type III secretion protein, HrcV family |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 0.0033977 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTTTAACA AAGTTTTGGT AGGGTTAAGG AGTCATCCAG AATTAATAAT TCTTGGATTA ATGGTGATGA TTATCGCCAT GCTCATAATT CCATTGCCCA CCTATTTAAT CGACTTTTTG ATTGGGCTTA ACTTAACATT GGCAATACTT GTATTTTTAG GATCATTCTA TGTTGATAGG ATCTTAAGCT TTTCTTCATT TCCATCAATC CTCCTTATCA CAACGTTATT TCGTTTGGCG CTGGCGATCA GTACCAGTCG ACTTATACTT CTTGAGGCGG ATGCTGGAGA AATTATAACG AGTTTTGGTG AGTTCGTTAT TGGAGATAGC CTGGTAGTTG GTTTTGTTAT TTTCTCCATT GTTACTATTG TTCAGTTTAT CGTGATTACT AAAGGTTCGG AACGTGTGGC TGAAGTTGCT GCCCGCTTTT CGCTTGACGG TATGCCAGGT AAACAAATGA GCATTGACGC CGATCTACGC GCCGGGATCA TTGATGCAGA TTTAGCAAAA GAACGTCGTA GTGTATTAGA ACGAGAGAGC CAGTTGTATG GTTCCTTTGA TGGTGCGATG AAATTTATCA AAGGTGATGC TATTGCAAAC ATTATTATTA TCTTTGTTAA TATTATCGGT GGGCTATCAG TAGGAGTAGG CCAAAATGGA ATGGATTTCT CAACAGCGTT GACTGTCTAC ACAATTCTTA CTGTCGGTGA TGGTCTTGTT TCTCAAATTC CAGCTTTATT AATTGCTATT AGCGCAGGAT TTATCGTTAC GCGCGTAAAT GGCGATAGTG ATAATATGGG GCAAAATATA ATGTCCCAGT TATTAAGTAA TTCTTTTGTC ATTGTTGTGA CATGTGTCCT CGCGCTAAGT ATTGGGTTGC TTCCAGGTTT TCCCCTTCTA GTGTTTTTAT GTTTGGCAGT AATCTTAGGA ATTTACTTTT ACTTTAAATT CAAAAAGAAA GGGACTGAAG AAACGGTTGT TGAGGGAGAT ATTACCGTTG GGTTGGAACC CTATAATCAA GATGATGATA TCTCATTAGG TATCATTAAT AAACTTGATC AGGTTATTAC CGAAACGGTA CCCTTGGTCT TGATTATGAA TAGTGTACAG GCTAAAAAAT ACACTGAAAT CAATCTTGCT GATAGGATTC GTAGTCAGTT TTTTATTGAG TATGGTATCC GCATTCCCGG TATTGTCATT CGTGAGGGGG AAGGTCTTAA TGATGAAGAT GTCATATTAA TGCTAAATGA AGTCAGAGCT TCACAATTTA AAATTTATCA TGATCTTGTC TTGTTGGTTG AATATTCAGA TGAAGTGGTT TCGACTTTGA TCAAGAAACC TGTCATTGTA AATAGTAATG GTGAACAATA TTATTGGGTT ACGAAAAGTG ATGCTCAAAA ATTAACAAAA ATTGGCTGTT ATACTCGCAC GGCCATGGAT GAAATGTATA ATCATTTATC TGTCTGTCTG GCTCATAATA TTAATGAGTA CTTTGGTATA CAAGAAACAA AATATATTCT TGATCAATTA GAGATGAAGT ATTCTGATCT ATTAAAAGAA ATATTAAGAT ATATAACCGT GCAGCGCATT TCAGAGGTAA TTCAGCGTCT GATCCAGGAG CGAATTTCAG TGCGCAATAT GCGGTTAGTT ATGGAGGCCT TAGCATTATG GAGCCCACGA GAGAAAGATA TAATCACACT CGTCGAGCAT GTACGAGGTG CATTAGGTCG CTACATTTGC CATAAGTTTT CATATTCTGG AGAAATTAAA GCAATTGTGA TTTCGCCTGA AATAGAGGAC AGAATCAGAG ATGGTGTCAG GCCTACCGCT GGCGGTACTT TTCTTAATCT CGATGCATCC GAAGCTGAGA TGATTCTGGA TAATTTTAAA CTGGCACTTT CTGGAATCAA TATTCCTATT AAAGACATTA TTTTACTGGG ATCTGTGGAT ATTCGTCGTT TTATCAAAAA ACTTATTGAA TCTAGTTATC GAGACCTCGA AGTACTTTCG TACGGGGAAC TAACGGAAAA TGTTCCCGTT AATATTCTGA AAACTATTTA G
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Protein sequence | MFNKVLVGLR SHPELIILGL MVMIIAMLII PLPTYLIDFL IGLNLTLAIL VFLGSFYVDR ILSFSSFPSI LLITTLFRLA LAISTSRLIL LEADAGEIIT SFGEFVIGDS LVVGFVIFSI VTIVQFIVIT KGSERVAEVA ARFSLDGMPG KQMSIDADLR AGIIDADLAK ERRSVLERES QLYGSFDGAM KFIKGDAIAN IIIIFVNIIG GLSVGVGQNG MDFSTALTVY TILTVGDGLV SQIPALLIAI SAGFIVTRVN GDSDNMGQNI MSQLLSNSFV IVVTCVLALS IGLLPGFPLL VFLCLAVILG IYFYFKFKKK GTEETVVEGD ITVGLEPYNQ DDDISLGIIN KLDQVITETV PLVLIMNSVQ AKKYTEINLA DRIRSQFFIE YGIRIPGIVI REGEGLNDED VILMLNEVRA SQFKIYHDLV LLVEYSDEVV STLIKKPVIV NSNGEQYYWV TKSDAQKLTK IGCYTRTAMD EMYNHLSVCL AHNINEYFGI QETKYILDQL EMKYSDLLKE ILRYITVQRI SEVIQRLIQE RISVRNMRLV MEALALWSPR EKDIITLVEH VRGALGRYIC HKFSYSGEIK AIVISPEIED RIRDGVRPTA GGTFLNLDAS EAEMILDNFK LALSGINIPI KDIILLGSVD IRRFIKKLIE SSYRDLEVLS YGELTENVPV NILKTI
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