| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_4090 |
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| Symbol | ppdB |
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| ID | 6968189 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli O157:H7 str. EC4115 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011353 |
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| Strand | - |
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| Start bp | 3789950 |
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| End bp | 3790513 |
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| Gene Length | 564 bp |
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| Protein Length | 187 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 643387848 |
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| Product | hypothetical protein |
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| Protein accession | YP_002272288 |
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| Protein GI | 209397816 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4795] Type II secretory pathway, component PulJ |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.171812 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 53 |
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| Fosmid unclonability p-value | 0.628463 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCCTGTAA AAGAGCAAGG TTTTTCTCTG CTGGAAGTGT TGATTGCTAT GGCGATCAGT
AGCGTATTGT TGTTGGGGGC TGCACGCTTT CTGCCTGCGT TACAGCGTGA AAGTTTAACG
AGCACCCGTA AGCTGGCACT GGAAGATGAA ATCTGGCTGC GGGTATTTAC CGTCGCGAAG
CATCTCCAGA GGGCGGGTTA TTGTCATGGC ATCTGTACCG GCGAAGGGCT GGAAATTGTC
GGACAGGGTG ACTGTATCAT TGTGCAGTGG GATGCGAACA GTAACGGTAT CTGGGATCGC
GAACCGGTAA AAGAGTCCGA CCAGATTGGA TTTCGTCTGA AGGAGCAAGT GTTGGAAACG
CTACGCGGTG CGACATCCTG TGAAGGTAAG GGCTGGGATA AAGTCACTAA TCCGGATGCC
ATCATTATCG ACACTTTTCA GGTCGTACGT CAGGATGTCA GCGGCTTCTC GCTGGTGTTG
ACGGTTAATA TGCGTGCTGC CAGTAAGTCT GAACCGCAAA CCGTGGTGGA TGCCAGCTAT
AGCGTGACAG GATTCAACCT GTGA
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| Protein sequence | MPVKEQGFSL LEVLIAMAIS SVLLLGAARF LPALQRESLT STRKLALEDE IWLRVFTVAK
HLQRAGYCHG ICTGEGLEIV GQGDCIIVQW DANSNGIWDR EPVKESDQIG FRLKEQVLET
LRGATSCEGK GWDKVTNPDA IIIDTFQVVR QDVSGFSLVL TVNMRAASKS EPQTVVDASY
SVTGFNL
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