| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_4088 |
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| Symbol | ppdC |
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| ID | 6967655 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli O157:H7 str. EC4115 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011353 |
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| Strand | - |
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| Start bp | 3789238 |
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| End bp | 3789561 |
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| Gene Length | 324 bp |
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| Protein Length | 107 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 643387846 |
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| Product | hypothetical protein |
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| Protein accession | YP_002272286 |
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| Protein GI | 209396653 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4967] Tfp pilus assembly protein PilV |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.198399 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 54 |
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| Fosmid unclonability p-value | 0.676509 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCAGCTT CCCTGAAGAA TCAACAAGGC TTTAGCCTGC CGGAGGTAAT GTTGGCGATG
GTGTTGATGG TGATGATTGT CACTGCGTTA TCGGGTTTCC AGCGAACATT AATGAACAGT
CTTACCAGCA GAAACCAGTA CCAACAGCTC TGGCGGCATG GTTGGCAGCA AACGCAATTG
CGCGCGATTT CGCCACCTGC CAACTGGCAG GTCAACCGAA TGCAGACATC GCAGGCGGGA
TGTGTCAGCA TCAGCGTTAC GCTAGTTTCA CCCGGGGGCA GAGCAGGCGA GATGACCCGC
CTGCATTGCC CGAATCGTCA GTAG
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| Protein sequence | MSASLKNQQG FSLPEVMLAM VLMVMIVTAL SGFQRTLMNS LTSRNQYQQL WRHGWQQTQL
RAISPPANWQ VNRMQTSQAG CVSISVTLVS PGGRAGEMTR LHCPNRQ
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