| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_3333 |
|---|
| Symbol | ccmF |
|---|
| ID | 6967800 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli O157:H7 str. EC4115 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011353 |
|---|
| Strand | - |
|---|
| Start bp | 3067876 |
|---|
| End bp | 3069819 |
|---|
| Gene Length | 1944 bp |
|---|
| Protein Length | 647 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 643387145 |
|---|
| Product | cytochrome c-type biogenesis protein CcmF |
|---|
| Protein accession | YP_002271608 |
|---|
| Protein GI | 209399270 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1138] Cytochrome c biogenesis factor |
|---|
| TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 68 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGCCGG AAATTGGTAA CGGGCTGCTG TGCCTGGCGC TGGGAATTGC GCTGCTGCTG
TCCGTGTATC CGCTATGGGG CGTGGCGCGC GGAGATGCGC GCATGATGGC GTCTTCCCGC
TTGTTTGCCT GGCTGCTGTT TATGTCTGTG GCTGGCGCAT TTCTGGTGCT GGTCAATGCT
TTCGTGGTCA ACGACTTTAC CGTCACCTAT GTTGCCAGCA ACTCCAATAC CCAGCTTCCG
GTGTGGTATC GCGTGGCGGC TACCTGGGGC GCACATGAAG GCTCACTGCT GCTGTGGGTG
CTGCTGATGA GCGGCTGGAC CTTTGCGGTG GCGATTTTTA GTCAGCGTAT TCCGCTGGAT
ATTGTGGCCC GCGTACTGGC GATAATGGGG ATGGTCAGTG TCGGCTTTTT GCTGTTCATT
CTCTTTACCT CTAACCCATT CTCACGCACG CTGCCGAACT TCCCGATTGA AGGGCGCGAT
CTTAACCCGC TGTTACAGGA TCCGGGGCTG ATCTTCCATC CGCCTCTGCT TTATATGGGG
TACGTGGGTT TCTCGGTGGC GTTTGCTTTT GCCATTGCTT CTTTGCTGAG CGGGCGTCTG
GACAGCACTT ATGCGCGTTT TACTCGTCCG TGGACGCTGG CAGCGTGGAT CTTCCTGACG
CTCGGCATCG TGCTCGGTTC CGCATGGGCC TATTACGAAC TCGGCTGGGG TGGCTGGTGG
TTCTGGGATC CGGTAGAAAA CGCCTCGTTT ATGCCGTGGC TGGTGGGGAC TGCGCTGATG
CACTCACTGG CGGTCACTGA ACAACGCGCC AGCTTCAAAG CGTGGACATT ACTGCTGGCA
ATCAGTGCCT TCTCGTTGTG TCTGTTGGGG ACTTTCCTCG TGCGTTCCGG CGTGCTGGTA
TCGGTACACG CGTTTGCGTC TGATCCGGCG CGCGGTATGT TTATCCTCGC CTTTATGGTG
CTGGTGATTG GCGGTTCGCT GCTGCTGTTT GCCGCGCGTG GACACAAAGT TCGCTCACGC
GTAAACAATG CGCTGTGGTC GCGGGAATCT TTGCTGTTAG CGAACAACGT TTTGCTGGTC
GCCGCGATGC TGGTGGTGTT GCTGGGGACG CTGCTGCCGC TGGTGCACAA GCAACTGGGA
CTGGGCAGTA TTTCGATTGG CGAACCGTTC TTCAACACCA TGTTTACCTG GCTGATGGTG
CCGTTTGCGC TACTGCTGGG TGTCGGTCCT CTGGTGCGCT GGGGGCGCGA TCGCCCACGT
AAAATCCGCA ATTTATTGAT TATCGCCTTC ATCTCTACGC TGGTGCTGTC TCTGCTGTTG
CCGTGGCTGT TCGAAAGCAA AGTTGTGGCG ATGACGGTGC TCGGCCTGGC AATGGCCTGC
TGGATTGCGG TGCTGGCAAT TGCGGAAGCT GCGCTACGTA TTTCACGCGG CACGAAAACC
ACCTTCAGTT ATTGGGGGAT GGTGGCGGCT CACCTGGGGC TGGCAGTGAC AATTGTTGGC
ATTGCCTTTA GCCAGAACTA TAGCGTTGAG CGTGATGTGC GCATGAAGTC CGGCGATAGC
GTCGATATTC ATGAATATCG CTTCACCTTC CGTGATGTCA AAGAGGTGAC TGGCCCGAAC
TGGCGTGGCG GTGTGGCGAC TATCGGCGTA ACGCGAGAGG GTAAACCGGA AACGGTGCTG
TATGCGGAAA AACGTTATTA CAACACTGCC GGGTCGATGA TGACCGAAGC GGCAATTGAC
GGCGGCATCA CGCGTGACCT GTACGCCGCG CTCGGTGAAG AGCTGGAAAA CGGCGCGTGG
GCTGTGCGTC TTTACTACAA ACCATTTGTT CGCTGGATTT GGGCGGGCGG GCTGATGATG
GCGTTGGGCG GACTGCTGTG TCTGTTTGAT CCTCGCTATC GTAAGCGCGT GAGCCCGCAA
AAAACTGCGC CGGAGGCTGT ATGA
|
|---|
| Protein sequence | MMPEIGNGLL CLALGIALLL SVYPLWGVAR GDARMMASSR LFAWLLFMSV AGAFLVLVNA
FVVNDFTVTY VASNSNTQLP VWYRVAATWG AHEGSLLLWV LLMSGWTFAV AIFSQRIPLD
IVARVLAIMG MVSVGFLLFI LFTSNPFSRT LPNFPIEGRD LNPLLQDPGL IFHPPLLYMG
YVGFSVAFAF AIASLLSGRL DSTYARFTRP WTLAAWIFLT LGIVLGSAWA YYELGWGGWW
FWDPVENASF MPWLVGTALM HSLAVTEQRA SFKAWTLLLA ISAFSLCLLG TFLVRSGVLV
SVHAFASDPA RGMFILAFMV LVIGGSLLLF AARGHKVRSR VNNALWSRES LLLANNVLLV
AAMLVVLLGT LLPLVHKQLG LGSISIGEPF FNTMFTWLMV PFALLLGVGP LVRWGRDRPR
KIRNLLIIAF ISTLVLSLLL PWLFESKVVA MTVLGLAMAC WIAVLAIAEA ALRISRGTKT
TFSYWGMVAA HLGLAVTIVG IAFSQNYSVE RDVRMKSGDS VDIHEYRFTF RDVKEVTGPN
WRGGVATIGV TREGKPETVL YAEKRYYNTA GSMMTEAAID GGITRDLYAA LGEELENGAW
AVRLYYKPFV RWIWAGGLMM ALGGLLCLFD PRYRKRVSPQ KTAPEAV
|
|---|
| |