| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_2127 |
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| Symbol | lsrC |
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| ID | 6966590 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli O157:H7 str. EC4115 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011353 |
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| Strand | + |
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| Start bp | 2041542 |
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| End bp | 2042570 |
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| Gene Length | 1029 bp |
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| Protein Length | 342 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 643386024 |
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| Product | autoinducer-2 ABC transporter, permease protein LsrC |
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| Protein accession | YP_002270513 |
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| Protein GI | 209398891 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1172] Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 55 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGAAGT TTATTCAGAA CAACCGTGAA ATCACGGCAC TGCTGGCGGT GCTGCTGCTG
TTTGTATTAC CCGGTTTTCT CGACCGCCAG TATTTAAGTG TGCAAACGCT GACCATGGTT
TATAGCAGCG CGCAAATCCT GATCCTGCTG GCAATGGGCG CGACGCTGGT AATGCTTACG
CGCAATATTG ATGTTTCAGT GGGTTCGATT ACCGGAATGT GCGCGGTGCT GTTGGGGATG
TTACTGAACG CAGGATATTC ACTACCTGTT GCCTGTGTCG CGACTTTACT GCTTGGTTTG
CTCGCGGGAT TTTTCAACGG TGTCCTGGTC GCGTGGCTAA AGATCCCTGC CATTGTTGCC
ACCCTTGGCA CGTTAGGGTT GTACAGAGGC ATCATGTTGC TGTGGACTGG CGGTAAATGG
ATTGAAGGGT TACCCGCCGA ACTGAAACAG CTCTCCGCCC CGCTGCTGCT TGGCGTTTCA
GCAATTGGTT GGTTAACGAT AATTCTGGTG GCATTTATGG CCTGGCTGCT GGCGAAGACA
GCGTTTGGAC GCAGTTTTTA TGCCACGGGC GATAATTTAC AGGGCGCTCG TCAACTGGGC
GTTCGTACGG AAGCCATTCG CATTGTGGCA TTTTCGTTGA ACGGCTGCAT GGCGGCACTG
GCGGGAATTG TGTTTGCTTC GCAGATTGGT TTTATCCCCA ACCAGACCGG TACCGGGCTG
GAGATGAAAG CAATTGCAGC CTGCGTGCTG GGCGGCATTA GTTTGCTCGG CGGTTCCGGT
GCGATCATCG GTGCGGTACT CGGCGCATGG TTCCTGACGC AGATCGATAG CGTACTGGTG
CTGTTGCGCA TTCCGGCATG GTGGAATGAT TTTATCGCGG GTCTGGTTCT GCTGGCGGTG
CTGGTGTTTG ATGGACGCCT GCGTTGTGCG CTGGAACTTA ATCTGCGGCG GCAAAAATAT
GCCCGCTTTA TGACGCCACC GCCATCCGTT AAACCCGCTT CGTCAGGTAA AAAACGGGAG
GCTGCATAA
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| Protein sequence | MLKFIQNNRE ITALLAVLLL FVLPGFLDRQ YLSVQTLTMV YSSAQILILL AMGATLVMLT
RNIDVSVGSI TGMCAVLLGM LLNAGYSLPV ACVATLLLGL LAGFFNGVLV AWLKIPAIVA
TLGTLGLYRG IMLLWTGGKW IEGLPAELKQ LSAPLLLGVS AIGWLTIILV AFMAWLLAKT
AFGRSFYATG DNLQGARQLG VRTEAIRIVA FSLNGCMAAL AGIVFASQIG FIPNQTGTGL
EMKAIAACVL GGISLLGGSG AIIGAVLGAW FLTQIDSVLV LLRIPAWWND FIAGLVLLAV
LVFDGRLRCA LELNLRRQKY ARFMTPPPSV KPASSGKKRE AA
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