| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECH74115_2080 |
|---|
| Symbol | |
|---|
| ID | 6970802 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli O157:H7 str. EC4115 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011353 |
|---|
| Strand | - |
|---|
| Start bp | 1978202 |
|---|
| End bp | 1979461 |
|---|
| Gene Length | 1260 bp |
|---|
| Protein Length | 419 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 643385985 |
|---|
| Product | leucine-rich repeat protein |
|---|
| Protein accession | YP_002270474 |
|---|
| Protein GI | 209397006 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4886] Leucine-rich repeat (LRR) protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 66 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTCC CTTCAATATT TAACAAAATA AAACCACAAT CCATACAGCA ACATCCAGAA
AAAAATCAAC TTAACTGGAT GCTCGAATTA AATAAATGGA AAGAAGAACG TATACTTACA
GGTGAAATCC ATCGTCCGGA ATGTCGAAAC GAAGCCGCTA AAAGGATAAG CTGTGCTTTT
TTGTCGAAAC AGAATGACAT TGATTTATCA GGACTTAATT TATCTACTCA ACCACCAGGG
CTGCAAAACT TCACCTCTAT CAATCTTGAT AATAACCAAC TCACACATTT TGATGCAACC
AACTACGATA GACTCGTAAA ACTTAGTCTG AATAGTAACA CTCTTGAGTC AATAAATATT
CATCAAGGCA GAAATGTAAG CATTACACAT ATATCTATGA ATAATAATTG TCTCAGAAAT
ATTGATATAG ATAGGCTTTC ATCAATTACT TATTTTAGTG CGGCACATAA TAAACTAGAG
TTTGTGCAAT TAGAATCTTG CGAATGGCTG CAATACCTGA ATCTCAGCCA TAATCAATTA
ACTGATATTG TTACAGGAAA TAAAGAAGAA CTCTTACTGC TGGATCTATC CCATAATAAA
CTAGCAAGTT TACACAATGC CTTATTTCCC AACTTAAATA CGTTACTTAT CAACAACAAC
TTGCTTTCTG AAATTAAAAT GTTTTATAGC AACTTCTGCA AAGTTCAGAC ATTAAACGCT
GCTAACAATC AGTTGGAAAA AATAAACCTT CATTTCCTGA CTTATCTTTC ATCTATCAAA
AGTTTAAGGC TGGACAATAA TAAAATAACT CGCATTGATA CTGAGAACAC ATCCGATATT
AGAAGTTTAT TCCCCATAAT AAAGAAGAGC GAAAGCTTAA ATTTTTTAAA TATTTCTGGC
GAGAACAATT GCCCTACTAT CCAGCTCATG TTATTTAATT TGTTTTCCCC AGCACTTAAG
CTTAATACTG GCCTGGCAAT TCTTTCGCCT GGTGCATTTG AAGATCACTC TGACGGATTA
GATGTGGATA ACGAATTGTT TCACTATACT ATTAATAAAG CATATACCCC ATATAATATA
CATACTTATA AAACAGAAGA AGTTGTAAAC CAGAGGAATA TAAAAATTAA AAATATGACC
TTAGATGAAA TAAACAATAC TTATTGTAAT AACGATTATT ACAATGAGGC AATAAGAGAG
GAACCGATAG ACTTTCTGGA CAGATCGTTT TCCTCCAGCT CATGGCCTTT TTATCACTAA
|
|---|
| Protein sequence | MKFPSIFNKI KPQSIQQHPE KNQLNWMLEL NKWKEERILT GEIHRPECRN EAAKRISCAF
LSKQNDIDLS GLNLSTQPPG LQNFTSINLD NNQLTHFDAT NYDRLVKLSL NSNTLESINI
HQGRNVSITH ISMNNNCLRN IDIDRLSSIT YFSAAHNKLE FVQLESCEWL QYLNLSHNQL
TDIVTGNKEE LLLLDLSHNK LASLHNALFP NLNTLLINNN LLSEIKMFYS NFCKVQTLNA
ANNQLEKINL HFLTYLSSIK SLRLDNNKIT RIDTENTSDI RSLFPIIKKS ESLNFLNISG
ENNCPTIQLM LFNLFSPALK LNTGLAILSP GAFEDHSDGL DVDNELFHYT INKAYTPYNI
HTYKTEEVVN QRNIKIKNMT LDEINNTYCN NDYYNEAIRE EPIDFLDRSF SSSSWPFYH
|
|---|
| |