Gene ECD_01980 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagECD_01980 
SymbolyegN 
ID
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli BL21(DE3) 
KingdomBacteria 
Replicon accessionCP001509 
Strand
Start bp2054184 
End bp2057306 
Gene Length3123 bp 
Protein Length1040 aa 
Translation table11 
GC content57% 
IMG OID 
Productmultidrug efflux system, subunit B 
Protein accessionACT43831 
Protein GI253978161 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAGGTGT TACCCCCGAG CAGCACAGGC GGCCCGTCGC GCCTGTTTAT TATGCGTCCT 
GTGGCCACCA CGCTGCTGAT GGTGGCGATC TTACTCGCCG GGATTATCGG TTATCGCGCC
CTGCCCGTTT CGGCGCTGCC GGAAGTGGAC TATCCGACCA TTCAGGTGGT CACGCTCTAC
CCAGGTGCGA GCCCGGATGT CATGACCTCT GCCGTTACCG CGCCGCTCGA ACGCCAGTTC
GGGCAGATGT CTGGTCTGAA ACAGATGTCG TCGCAAAGTT CCGGCGGTGC GTCAGTTATC
ACTTTGCAGT TCCAGCTAAC ATTACCGCTG GATGTCGCCG AGCAGGAAGT ACAGGCCGCG
ATTAACGCTG CGACCAACTT GTTGCCGAGC GATCTGCCTA ACCCGCCGGT TTACAGCAAA
GTGAACCCGG CAGATCCGCC GATCATGACG CTCGCCGTCA CCTCAACAGC CATGCCGATG
ACGCAAGTGG AAGATATGGT GGAAACCCGC GTCGCGCAGA AAATCTCGCA GATTTCCGGC
GTCGGCCTGG TGACGCTTTC CGGCGGCCAG CGTCCGGCTG TTCGCGTCAA ACTTAACGCT
CAGGCGATTG CCGCCCTCGG CCTGACCAGC GAAACCGTGC GCACCGCCAT TACCGGCGCT
AACGTTAACT CGGCAAAAGG TAGCCTCGAC GGCCCTTCCC GTGCGGTCAC GCTTTCCGCG
AACGACCAGA TGCAATCCGC CGAAGAGTAT CGCCAGCTAA TCATCGCCTA CCAGAACGGC
GCGCCGATTC GTCTTGGCGA TGTCGCAACC GTAGAGCAAG GTGCAGAAAA CAGCTGGCTT
GGCGCATGGG CGAACAAAGA ACAGGCCATT GTGATGAATG TTCAGCGCCA GCCCGGTGCT
AACATTATCT CCACCGCCGA CAGCATCCGG CAGATGCTGC CACAGCTCAC CGAGAGTCTG
CCGAAATCGG TGAAGGTAAC AGTGCTTTCC GATCGCACCA CCAATATCCG CGCATCGGTC
AACGATACCC AGTTTGAATT GATGATGGCT ATCGCGCTGG TAGTCATGAT TATCTACCTG
TTTTTGCGCA ATATTCCGGC GACCATCATT CCCGGCTTCG CAGTGCCGCT GTCGTTAATC
GGCACCTTCG CGGTCATGGT GTTTCTCGAT TTTTCAATCA ATAACCTGAC GCTGATGGCG
TTAACTATCG CCACCGGGTT CGTGGTCGAT GACGCCATCG TGGTGATCGA AAATATTTCC
CGCTATATCG AAAAAGGCGA AAAACCGTTG GCGGCGGCGC TCAAGGGCGC AGGTGAAATC
GGCTTTACCA TTATCTCGCT GACCTTCTCG CTGATTGCGG TGTTGATCCC ACTGCTGTTT
ATGGGCGATA TCGTCGGGCG ACTGTTCCGC GAATTTGCTA TTACCCTGGC GGTAGCGATT
TTGATCTCAG CGGTGGTGTC GCTGACCCTG ACACCGATGA TGTGCGCGCG GATGCTCAGC
CAGGAGTCGT TGCGTAAACA GAACCGCTTC TCCCGTGCCT CGGAAAAAAT GTTCGACAGG
ATAATCGCCG CCTATGGTCG TGGACTGGCG AAAGTGCTGA ATCATCCGTG GCTGACCTTA
AGCGTGGCAC TCAGCACGCT GCTGCTTAGC GTGCTGCTGT GGGTGTTCAT TCCGAAAGGT
TTCTTCCCGG TACAGGACAA CGGCATTATT CAGGGCACTT TGCAGGCACC GCAATCCAGC
TCCTTTGCCA ATATGGCCCA GCGGCAACGC CAGGTCGCGG ACGTGATTTT GCAGGATCCG
GCAGTGCAAA GTCTGACCTC ATTTGTTGGC GTTGATGGCA CTAACCCGTC GCTGAACAGT
GCGCGTTTGC AGATCAACCT CAAACCGCTG GATGAACGTG ATGATCGGGT GCAAAAAGTC
ATCGCCCGTC TGCAAACGGC GGTGGATAAA GTGCCGGGCG TCGATCTCTT CCTGCAACCA
ACGCAGGACC TGACCATCGA TACTCAGGTC AGCCGCACCC AGTACCAGTT TACCTTGCAG
GCCACCTCAC TGGATGCGCT CAGTACCTGG GTGCCAGAGT TGATGGAAAA ACTCCAGCAA
CTGCCACAGC TTTCTGATGT CTCCAGCGAC TGGCAGGACA AAGGGCTGGT GGCGTATGTC
AATGTTGATC GCGACAGCGC CAGCCGTCTG GGGATCAGCA TGGCGGATGT CGATAACGCC
CTGTACAACG CGTTTGGTCA GCGGCTGATT TCCACTATTT ATACTCAGGC TAACCAGTAT
CGCGTGGTGC TGGAACACAA CACCGAAAAT ACCCCAGGCC TCGCGGCGCT GGATACCATT
CGCCTGACCA GCAGCGACGG TGGCGTGGTG CCGCTAAGCT CAATTGCCAA AATTGAGCAG
CGTTTTGCGC CGCTCTCCAT CAACCATCTG GATCAGTTCC CGGTAACGAC CATCTCCTTT
AACGTGCCGG ATAACTATTC GCTGGGTGAT GCGGTGCAGG CGATTATGGA CACCGAGAAG
ACGCTGAATC TGCCGGTGGA TATCACCACG CAATTCCAGG GCAGCACCCT CGCCTTCCAG
TCGGCGCTGG GCAGCACTGT CTGGCTGATT GTCGCGGCGG TGGTGGCGAT GTATATCGTG
CTCGGCATTC TGTACGAGAG CTTTATTCAC CCGATCACCA TTCTCTCGAC GCTACCCACC
GCAGGGGTTG GCGCACTGCT GGCGTTGCTG ATTGCTGGTA GCGAACTGGA TGTGATTGCG
ATTATCGGCA TTATTTTGCT GATCGGTATC GTGAAGAAGA ACGCCATCAT GATGATCGAC
TTCGCGCTGG CTGCCGAGCG CGAGCAAGGC ATGTCGCCGC GCGAGGCAAT CTACCAGGCT
TGTCTGTTGC GTTTTCGTCC GATCCTGATG ACCACCCTGG CGGCTCTGCT TGGCGCGCTG
CCGCTGATGT TGAGTACCGG GGTCGGCGCG GAACTGCGTC GTCCGTTAGG TATCGGCATG
GTCGGCGGCC TGATTGTCAG CCAGGTGCTG ACGCTGTTCA CCACGCCGGT GATTTATCTG
CTGTTCGACC GCCTGGCATT GTGGACCAAA AGCCGCTTTG CCCGTCATGA AGAGGAGGCG
TAA
 
Protein sequence
MQVLPPSSTG GPSRLFIMRP VATTLLMVAI LLAGIIGYRA LPVSALPEVD YPTIQVVTLY 
PGASPDVMTS AVTAPLERQF GQMSGLKQMS SQSSGGASVI TLQFQLTLPL DVAEQEVQAA
INAATNLLPS DLPNPPVYSK VNPADPPIMT LAVTSTAMPM TQVEDMVETR VAQKISQISG
VGLVTLSGGQ RPAVRVKLNA QAIAALGLTS ETVRTAITGA NVNSAKGSLD GPSRAVTLSA
NDQMQSAEEY RQLIIAYQNG APIRLGDVAT VEQGAENSWL GAWANKEQAI VMNVQRQPGA
NIISTADSIR QMLPQLTESL PKSVKVTVLS DRTTNIRASV NDTQFELMMA IALVVMIIYL
FLRNIPATII PGFAVPLSLI GTFAVMVFLD FSINNLTLMA LTIATGFVVD DAIVVIENIS
RYIEKGEKPL AAALKGAGEI GFTIISLTFS LIAVLIPLLF MGDIVGRLFR EFAITLAVAI
LISAVVSLTL TPMMCARMLS QESLRKQNRF SRASEKMFDR IIAAYGRGLA KVLNHPWLTL
SVALSTLLLS VLLWVFIPKG FFPVQDNGII QGTLQAPQSS SFANMAQRQR QVADVILQDP
AVQSLTSFVG VDGTNPSLNS ARLQINLKPL DERDDRVQKV IARLQTAVDK VPGVDLFLQP
TQDLTIDTQV SRTQYQFTLQ ATSLDALSTW VPELMEKLQQ LPQLSDVSSD WQDKGLVAYV
NVDRDSASRL GISMADVDNA LYNAFGQRLI STIYTQANQY RVVLEHNTEN TPGLAALDTI
RLTSSDGGVV PLSSIAKIEQ RFAPLSINHL DQFPVTTISF NVPDNYSLGD AVQAIMDTEK
TLNLPVDITT QFQGSTLAFQ SALGSTVWLI VAAVVAMYIV LGILYESFIH PITILSTLPT
AGVGALLALL IAGSELDVIA IIGIILLIGI VKKNAIMMID FALAAEREQG MSPREAIYQA
CLLRFRPILM TTLAALLGAL PLMLSTGVGA ELRRPLGIGM VGGLIVSQVL TLFTTPVIYL
LFDRLALWTK SRFARHEEEA