| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | ECD_00448 |
|---|
| Symbol | rhsD |
|---|
| ID | 0 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli BL21(DE3) |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | CP001509 |
|---|
| Strand | + |
|---|
| Start bp | 492407 |
|---|
| End bp | 496687 |
|---|
| Gene Length | 4281 bp |
|---|
| Protein Length | 1426 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | |
|---|
| Product | rhsD element protein |
|---|
| Protein accession | ACT42347 |
|---|
| Protein GI | 253976677 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGGAA AACCAGCGGC GCGTCAGGGA GATATGACTC AGTATGGCGG TCCCATTGTC
CAGGGTTCGG CAGGTGTAAG AATTGGCGCG CCCACCGGCG TGGCGTGCTC GGTGTGTCCG
GGCGGGATGA CTTCGGGCAA CCCGGTAAAT CCGCTGCTGG GGGCGAAGGT GCTGCCCGGC
GAGACGGACC TTGCGCTGCC CGGCCCGCTG CCGTTCATTC TCTCCCGCAC CTACAGCAGC
TACCGGACCA GGACACCCGC GCCGGTGGGA GTGTTTGGCC CCGGCTGGAA AGCGCCTTCT
GATATCCGCT TACAGCTACG CGATGATGCA CTGGTACTCA ACGACAACGG CGGGCGGAGC
ATTCACTTTG AGCCGCTGCT GCCGGGGGAG GCGGTGTACA GCCGCAGCGA GTCAATGTGG
CTGGTGCGCG GTGGTAAGGC AGCGCAGCCG GACGGCCACA CGCTGGCGCG GCTGTGGGGG
GCGCTGCCGC CGGATATCCG GTTAAGCCCG CATCTTTACC TGGCGACCAA CAGCGCACAG
GGGCCGTGGT GGATACTGGG GTGGTCAGAG CGGGTACCGG GTGCTGAGGA CGTACTGCCA
GCGCCGCTGC CGCCGTACCG GGTGCTTACC GGGCTGGCAG ACCGTTTCGG GCGGACGCTG
ACGTACCGGC GTGAGGCCGC AGGCGACCTG GCCGGGGAAA TCACCGGCGT GACGGACGGT
GCCGGGCGGG AGTTCCGTCT GGTGCTGACC ACGCAGGCGC AGCGTGCGGA AGAGGCCCGC
ACCTCTTCGC TATCTTCTTC TGACAGTTCC CGCCCTCTCT CAGCCTCAGC GTTCCCCGAC
ACACTGCCCG GTACCGAATA CGGCCCCGAC AGGGGTATCC GCCTTTCGGC GGTGTGGCTG
ATGCACGACC CGGCATACCC GGAGAGCCTG CCCGCTGCGC CACTGGTGCG GTACACGTAT
ACGGAAGCCG GTGAACTGCT GGCGGTATAT GACCGCAGCA ATACGCAGGT GCGCGCTTTC
ACGTATGACG CGCAGCACCC GGGCCGGATG GTGGCGCACC GTTACGCGGG AAGGCCGGAG
ATGCGCTACC GCTACGACGA TACGGGGCGG GTGGTGGAGC AACTGAACCC GGCAGGGTTA
AGCTACCGCT ATCTTTATGA GCAGGACCGC ATCACCGTCA CCGACAGCCT GAACCGGCGT
GAGGTGCTGC ATACAGAAGG CGGGGCCGGG CTGAAACGGG TGGTGAAAAA AGAACTGGCG
GACGGCAGCG TCACGCGCAG CGGGTATGAC GCGGCAGGAA GGCTCACGGC GCAGACGGAC
GCGGCGGGAC GGAGGACAGA GTACGGTCTG AATGTGGTGT CCGGCGATAT CACGGACATC
ACCACACCGG ACGGGCGGGA GACGAAATTT TACTATAACG ACGGGAACCA GCTGACGGCG
GTGGTGTACC CGGACGGGCT GGAGAGCCGC CGGGAATATG ATGAACCGGG CAGGCTGGTA
TCGGAGACAT CGCGCAGCGG GGAGACAGTA CGCTACCGCT ACGATGACGC GCACAGTGAG
TTACCGGCGA CGACAACGGA TGCGACGGGC AGCACCCGGC AGATGACGTG GAGCCGCTAC
GGGCAGTTGC TGGCGTTCAC TGACTGCTCG GGCTACCAGA CCCGCTATGA ATACGACCGC
TTCGGCCAGA TGACGGCGGT TCACCGCGAG GAAGGTATCA GCCTTTACCG CCACTATGAC
AACCGTGGCC GGTTAACCTC GGTGAAAGAC GCACAGGGCC GTGAAACGCG GTATGAATAC
AACGCCGCAG GCGACCTGAC TGCCGTCATT ACCCCGGACG GCAACCGGAG CGAGACACAG
TACGATGCGT GGGGAAAGGC GGTCAGCACC ACGCAGGGCG GGCTGACGCG CAGTATGGAG
TACGATGCTG CCGGACGTGT CATCAGCCTG ACCAACGAGA ACGGCAGCCA CAGCGTCTTC
AGTTACGATG CGCTGGACCG GCTGGTACAG CAGGGCGGCT TTGACGGGCG GACGCAACGT
TATCATTATG ACCTGACCGG AAAACTCACG CAGAGTGAGG ATGAGGGACT TGTCATCCTC
TGGTACTACG ATGCGTCGGA CCGCATCACG CACCGCACGG TGAACGGCGA ACCGGCAGAG
CAGTGGCAGT ATGATGGCCA CGGCTGGCTG ACAGACATCA GCCACCTGAG CGAAGGCCAC
CGTGTTGCCG TCCACTATGG CTATGACGAT AAAGGCCGCC TGACCGGCGA ATGCCAGACG
GTGGAGAACC CGGAGACGGG GGAACTGCTG TGGCAGCATG AGACGAAACA CGCATACAAC
GAGCAGGGGC TGGCAAACCG CGTCACGCCG GACAGCCTGC CGCCGGTGGA GTGGCTGACG
TATGGCAGCG GTTACCTGGC GGGCATGAAG CTGGGCGGGA CGCCGCTGGT CGAGTATACG
CGGGACAGGC TGCACCGTGA GACGGTGCGC AGCTTCGGCA GCATGGCAGG CAGTAATGCC
GCATACGAAC TGACCAGCAC ATACACCCCC GCAGGCCAGT TACAGAGCCA GCACCTGAAC
AGCCTGGTAT ATGACCGTGA CTACGGGTGG AGTGACAACG GCGACCTGGT GCGCATCAGC
GGCCCGCGAC AGACGCGGGA ATACGGCTAC AGCGCCACGG GCAGGCTGGA GAGTGTGCGC
ACCCTCGCAC CAGACCTGGA CATCCGCATC CCGTATGCCA CGGACCCGGC GGGCAACCGG
CTGCCGGACC CGGAGCTGCA CCCGGACAGT ACACTCACAG TGTGGCCGGA TAACCGCATC
GCGGAGGATG CGCACTATGT CTACCGCCAC GATGAATACG GCAGGCTGAC GGAGAAGACG
GACCGCATCC CGGCGGGTGT GATACGGACG GACGACGAGC GGACCCACCA CTACCACTAC
GACAGCCAGC ACCGCCTGGT GTTCTACACG CGGATACAGC ATGGCGAGCC ACTGGTCGAG
AGCCGCTACC TCTACGACCC GCTGGGACGG CGAATGGCAA AACGGGTCTG GCGGCGGGAG
CGTGACCTGA CGGGGTGGAT GTCGCTGTCG CGTAAACCGG AGGTGACGTG GTATGGCTGG
GACGGAGACA GGCTGACGAC GGTGCAGACT GACACCACAC GTATCCAGAC GGTATACGAG
CCGGGAAGCT TCACGCCGCT CATCCGGGTC GAGACAGAGA ACGGCGAGCG GGAAAAAGCG
CAGCGGCGCA GCCTGGCAGA GACGCTCCAG CAGGAAGGGA GTGAGAACGG CCACGGCGTG
GTGTTCCCGG CTGAACTGGT GCGGCTGCTG GACAGGCTGG AGGAAGAAAT CCGGGCAGAC
CGCGTGAGCA GTGAAAGCCG GGCGTGGCTT GCGCAGTGCG GGCTGACGGT GGAGCAACTG
GCCAGACAGG TGGAGCCGGA ATACACACCG GCGCGAAAAG CTCATCTTTA TCACTGCGAC
CACCGGGGAC TGCCGCTGGC GCTTATCAGC GAAGACGGCA ATACGGCGTG GAGCGCGGAA
TATGATGAAT GGGGCAACCA GCTTAATGAG GAGAACCCGC ATCATGTGTA TCAGCCGTAC
CGTCTGCCAG GGCAGCAGCA TGATGAGGAA TCAGGGCTGT ACTATAACCG TCACCGGTAC
TACGATCCGT TGCAGGGGCG GTATATTACT CAGGACCCGA TGGGGTTGAA AGGGGGATGG
AATTTATATC AGTATCCTTT AAATCCACTA CAACAAATTG ACCCTATGGG ATTATTGCAG
ACTTGGGATG ATGCCAGATC TGGAGCATGT ACGGGGGGAG TTTGTGGTGT TCTTTCACGT
ATAATAGGAC CAAGTAAATT TGATAGTACT GCAGATGCTG CGTTAGATGC TTTGAAAGAA
ACGCAGAATA GATCTCTATG TAATGATATG GAATACTCTG GTATTGTCTG TAAAGATACT
AATGGAAAAT ATTTTGCATC TAAGGCAGAA ACTGATAATT TAAGAAAGGA GTCATATCCT
CTGAAAAGAA AATGTCCCAC AGGTACAGAT AGAGTTGCTG CTTATCATAC TCACGGTGCA
GATAGTCATG GCGATTATGT TGATGAATTT TTTTCAAGTA GCGATAAAAA TCTTGTAAGA
AGTAAAGATA ATAATCTTGA AGCATTTTAT CTCGCAACAC CTGATGGACG ATTTGAGGCG
CTTAATAATA AAGGAGAATA TATTTTTATC AGAAATAGTG TCCCGGGATT GAGTTCAGTA
TGCATACCGT ATCATGATTA A
|
|---|
| Protein sequence | MSGKPAARQG DMTQYGGPIV QGSAGVRIGA PTGVACSVCP GGMTSGNPVN PLLGAKVLPG
ETDLALPGPL PFILSRTYSS YRTRTPAPVG VFGPGWKAPS DIRLQLRDDA LVLNDNGGRS
IHFEPLLPGE AVYSRSESMW LVRGGKAAQP DGHTLARLWG ALPPDIRLSP HLYLATNSAQ
GPWWILGWSE RVPGAEDVLP APLPPYRVLT GLADRFGRTL TYRREAAGDL AGEITGVTDG
AGREFRLVLT TQAQRAEEAR TSSLSSSDSS RPLSASAFPD TLPGTEYGPD RGIRLSAVWL
MHDPAYPESL PAAPLVRYTY TEAGELLAVY DRSNTQVRAF TYDAQHPGRM VAHRYAGRPE
MRYRYDDTGR VVEQLNPAGL SYRYLYEQDR ITVTDSLNRR EVLHTEGGAG LKRVVKKELA
DGSVTRSGYD AAGRLTAQTD AAGRRTEYGL NVVSGDITDI TTPDGRETKF YYNDGNQLTA
VVYPDGLESR REYDEPGRLV SETSRSGETV RYRYDDAHSE LPATTTDATG STRQMTWSRY
GQLLAFTDCS GYQTRYEYDR FGQMTAVHRE EGISLYRHYD NRGRLTSVKD AQGRETRYEY
NAAGDLTAVI TPDGNRSETQ YDAWGKAVST TQGGLTRSME YDAAGRVISL TNENGSHSVF
SYDALDRLVQ QGGFDGRTQR YHYDLTGKLT QSEDEGLVIL WYYDASDRIT HRTVNGEPAE
QWQYDGHGWL TDISHLSEGH RVAVHYGYDD KGRLTGECQT VENPETGELL WQHETKHAYN
EQGLANRVTP DSLPPVEWLT YGSGYLAGMK LGGTPLVEYT RDRLHRETVR SFGSMAGSNA
AYELTSTYTP AGQLQSQHLN SLVYDRDYGW SDNGDLVRIS GPRQTREYGY SATGRLESVR
TLAPDLDIRI PYATDPAGNR LPDPELHPDS TLTVWPDNRI AEDAHYVYRH DEYGRLTEKT
DRIPAGVIRT DDERTHHYHY DSQHRLVFYT RIQHGEPLVE SRYLYDPLGR RMAKRVWRRE
RDLTGWMSLS RKPEVTWYGW DGDRLTTVQT DTTRIQTVYE PGSFTPLIRV ETENGEREKA
QRRSLAETLQ QEGSENGHGV VFPAELVRLL DRLEEEIRAD RVSSESRAWL AQCGLTVEQL
ARQVEPEYTP ARKAHLYHCD HRGLPLALIS EDGNTAWSAE YDEWGNQLNE ENPHHVYQPY
RLPGQQHDEE SGLYYNRHRY YDPLQGRYIT QDPMGLKGGW NLYQYPLNPL QQIDPMGLLQ
TWDDARSGAC TGGVCGVLSR IIGPSKFDST ADAALDALKE TQNRSLCNDM EYSGIVCKDT
NGKYFASKAE TDNLRKESYP LKRKCPTGTD RVAAYHTHGA DSHGDYVDEF FSSSDKNLVR
SKDNNLEAFY LATPDGRFEA LNNKGEYIFI RNSVPGLSSV CIPYHD
|
|---|
| |