| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dvul_1715 |
|---|
| Symbol | |
|---|
| ID | 4663843 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio vulgaris DP4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008751 |
|---|
| Strand | + |
|---|
| Start bp | 2023216 |
|---|
| End bp | 2026743 |
|---|
| Gene Length | 3528 bp |
|---|
| Protein Length | 1175 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 639819954 |
|---|
| Product | DNA polymerase III, alpha subunit |
|---|
| Protein accession | YP_967159 |
|---|
| Protein GI | 120602759 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0587] DNA polymerase III, alpha subunit |
|---|
| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.49916 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.677237 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCTTC ACCTTTCACG CACAGAAGAG AACATGTCAG ATTTCGTACA CTTGCACTGT
CATACGGAAT ACAGCCTCCT CGACGGGGCC ATCCGTCTGA AGGACCTCGG CGCACGCGCC
AAGGACTACG GCATGACCGC CGCCGCCATC ACCGACCACG GTAACCTCTT CGGCGCGGCC
TATTTCTACA CCACCTGCAA GTCGTTCGGC ATCAAGCCCA TCATCGGCTG CGAGGTGTAC
GTCGCCGCCA CAGACCGCAC CGACAAGACC TCCGAATTCG CGCGCACCCG GTACCATCTC
GTGCTGCTGG CGCAGAACAA CGAAGGCTAC CACAACCTCG TGCGCCTTGT GACACGCGGC
TTCACGGAGG GCTTCCACTA CAAGCCCCGC GTGGACAAGG AACTGCTGCG CGAATACAGC
GACGGACTCA TCGCCCTTTC AGCCTGCCTC GCAGGTGAAG TGCCGCGCGT GCTCATGAAG
CAGGGCATGG ATGCGGGCAT AGCCACCGCG CAGGAATACG CCTCCATATT TCCCGGCCGC
TTCTACCTTG AACTGCAATC CAACGGCATC AAGGAACAGG AAGTCCTCAA CGAGAAGCTC
ATCGAACTTG CAGGCCACAC GAACCTTCCC CTTGTCGCCA CCAACGACTG CCACTACCTC
GACGCCACCG ACGTGGAGGC GCACGACATC CTTCTGTGCA TCCAGACGCA GACCACGGTG
GACGACCCGA AGCGGATGCG CTTCGAGACG CGCGAACTCT ACTACAAGTC GCCGGAGGAG
ATGGAAAAGG CCTTCGCCCA TGTGCCGGAG GCCATCGCCA ACACGGGGCG CATCGCCGAG
ATGTGCAATA TCGAGATGAG CTTCGGGAAG TACTTCTTCC CCGTCTATGA ACTGCCAGAG
GGCATGACCC TCGACACCGA ATTCCAGCGC CTCGCCGAAG AAGGCCTGAA GAAGCGTCTC
GAAAAGCACC CCGACCGCGA CACCATCGAC CACAAGGCCT ACTGGGACCG CCTCGAATGG
GAACTCAAGG TCATCACAGA CATGGGTTTT CCGGGGTACT TCCTCATCGT GCAGGACTTC
ATCAACTGGG CCAAGAACAA CGGCATCCCC GTCGGGCCGG GGCGTGGTTC GGCTGCCGGG
TCGCTGGTGG CATGGTCGCT GCGCATCACC AACCTCGACC CCATCCCCTA CGACCTGCTG
TTCGAGCGCT TTCTCAACAA CGAACGCGTC AGCATGCCGG ATATCGACGT GGACTTCTGC
GAACGTCGTC GCACCGAAGT CATACGGTAC GTCGCCGAAA AATACGGTGA AGATTCAGTT
TCGCAGATAA CCACCTTCGG CAAGATGAAG GCCAAGGCGG TGGTGCGTGA CGTGGGACGC
GCCCTTGGCA TGTCGTTCGG CGAGACCGAC CGCATCGCCA AGCTCATCCC CGAAGACCTC
AAGATGACCA TCAAGAAGGC TCTTGAGGCA GAACCCGACC TTGCCACGCT CTACCGGGAC
GACCCGCAGA TACGCAAGCT GCTGGATGTC TCCATGCGCC TTGAAGGGCT TTCGCGCCAC
GCCTCCACGC ACGCGGCGGG CGTGGTCATA TCCGACAAGC CCATGTCGGA GTATCTGCCG
CTGTACAAGG GAAAGAAGGG TGAAACCGTC ACCCAGTTCG ACATGAAGAT GGTCGAGAAG
GTCGGCCTCG TCAAATTCGA CTTCCTCGGC CTGCGCACCA TGACCCTCGT GCAGGATGCG
CTGGACGAAA TCACACGACA GGGCAAGACC CCGCCCGACC TCGACACGCT CTCTCTCGAC
GATGCCGAGA CCTATGAGCT GTACTCGCGC GGCGACACCG ACGGGGTGTT CCAGGTCGAA
AGCTCGGGCA TGCGGCAGTA TCTGCGCATG CTGCGGCCCA CCTGCTTCGA CGACATCATC
GCCATGCTCG CCCTCTACCG CCCCGGCCCG CTGGGTTCGG GCATGGTCGA CGAGTTCATC
AAGCGCAAGC ATGGCGAGGT GCCCGTCACC TACCCCGTGC CTTCACTCGA AGCGTGCCTG
CAACCCACCT ACGGCGTCAT CGTCTATCAG GAACAGGTGA TGCAGATCGC CCAGATAGTG
GGCAGCTACA CGCTGGGCGG CGCAGACCTT CTGCGGCGTG CCATGGGCAA GAAGATCGCC
GAGGCCATGG CCGAGGAGCG GACGAAGTTC GTACAAGGCG CGCAGAAGAA CGACATCCCC
AAGGAGAAGG CCAACGAGAT CTTCGACCTT ATGGAGAAGT TCGCGGAATA CGGGTTCAAC
AAGTCGCACA GCGCGGCCTA TGCCCTCATC TCGTACTACA CGGCCTTCCT CAAGGTGCAT
TTCCCGGTCG AGTTCATGGC CGCCCTGCTC ACCTCGGAAA TGGGCAACCA GGACAAGCTG
CTCAAGTATG TCGCCGCCTG CAAGGACATG GACATCGAGG TGCTGCGACC CAACGTGCAG
GTGAGCCGAC GCGAGTTCAC GGTGCATGAG GGACGCATCG TCTTCGGTCT TGGCGGCATC
AAGAACGTGG GCGACGAAGC CATTCGCGAA ATCGTCGACG CACGCGAAGA AGGCGGGCCC
TACGCCTCGC TGCTCGACAT GTGCGTTCGC GTCAACCTGC GCAAGGTCAC CAAGCGCGTC
ATCGAGAATC TCATCAAAGG CGGTGCGTGC GACTGTCTCG GCTGCACACG CGCCGGGATG
CTGGCATCGC TGGACACCGT GGTGGCGCGC GCCCAGAAGA AGCTCAAGGA ACGCGACTCG
AATCAGGTCT CGCTCTTCAC CATGATCAAG GAAGAGCCCA AGGTCTGCCC CGGCATCGGC
TTCGATTGCG AGGAACAGAC CGCCCCCGAA TGGCCCGACG ACCAGAAGCT GCGCTTCGAG
AAGGAGGCTC TCGGCTTCTT TCTCACCAGC CACCCCCTTC AGCCCTACCG CAAGGAACTC
TTCAGGCTGC GCCTCACCCC TCTTGAAGAG GCCCGCGACA TGCCCCCCGG CGCCGAGATA
CGCACGGCGG TGCTCGTCAC CACGCTCAAG GAGTTGATGA CCAAGAAGGG CCAGCGCATG
GCGTTCGCGG GTGTGGAAGA CCTCACAGCC TCTGCCGAGG TGGTCTTCTT TCCCGAACCG
TTCGCCGAGG CGCGCGAGTT GCTCAAGTCG GACCAGCCCC TGCTTCTGGA GGGCACACTC
GACAAGAAGG CCGACGATGG CAACGGCGGG CAGGGGCAAG GGGGTGATGA CGAGGAAGCC
GCGCCGCGTG ACATCAAAAT CATGGGTGCC AAGGTCATGC CGCTGGCGAT GGCCTGCTGT
TCCAGCGATG AGCCCGTCAT CGTCGAACTC GACACCCGTC GCATGAGCGC GGACTATCTC
GCGGGCTTGC GCGCCATCCT CGAAAAGCAT AAGGGCACCG TTCCTGTGAA CGTGCACATG
GTGGTCGACG AATCGCTGTG CCTCCTGCAG CTAGGCCCGC GCTGGACAGT CCAGCCCGGC
CCCGTGTTCG AGAACGACCT CAACAAATGG ACCCACGGAG GAATGTAG
|
|---|
| Protein sequence | MPLHLSRTEE NMSDFVHLHC HTEYSLLDGA IRLKDLGARA KDYGMTAAAI TDHGNLFGAA
YFYTTCKSFG IKPIIGCEVY VAATDRTDKT SEFARTRYHL VLLAQNNEGY HNLVRLVTRG
FTEGFHYKPR VDKELLREYS DGLIALSACL AGEVPRVLMK QGMDAGIATA QEYASIFPGR
FYLELQSNGI KEQEVLNEKL IELAGHTNLP LVATNDCHYL DATDVEAHDI LLCIQTQTTV
DDPKRMRFET RELYYKSPEE MEKAFAHVPE AIANTGRIAE MCNIEMSFGK YFFPVYELPE
GMTLDTEFQR LAEEGLKKRL EKHPDRDTID HKAYWDRLEW ELKVITDMGF PGYFLIVQDF
INWAKNNGIP VGPGRGSAAG SLVAWSLRIT NLDPIPYDLL FERFLNNERV SMPDIDVDFC
ERRRTEVIRY VAEKYGEDSV SQITTFGKMK AKAVVRDVGR ALGMSFGETD RIAKLIPEDL
KMTIKKALEA EPDLATLYRD DPQIRKLLDV SMRLEGLSRH ASTHAAGVVI SDKPMSEYLP
LYKGKKGETV TQFDMKMVEK VGLVKFDFLG LRTMTLVQDA LDEITRQGKT PPDLDTLSLD
DAETYELYSR GDTDGVFQVE SSGMRQYLRM LRPTCFDDII AMLALYRPGP LGSGMVDEFI
KRKHGEVPVT YPVPSLEACL QPTYGVIVYQ EQVMQIAQIV GSYTLGGADL LRRAMGKKIA
EAMAEERTKF VQGAQKNDIP KEKANEIFDL MEKFAEYGFN KSHSAAYALI SYYTAFLKVH
FPVEFMAALL TSEMGNQDKL LKYVAACKDM DIEVLRPNVQ VSRREFTVHE GRIVFGLGGI
KNVGDEAIRE IVDAREEGGP YASLLDMCVR VNLRKVTKRV IENLIKGGAC DCLGCTRAGM
LASLDTVVAR AQKKLKERDS NQVSLFTMIK EEPKVCPGIG FDCEEQTAPE WPDDQKLRFE
KEALGFFLTS HPLQPYRKEL FRLRLTPLEE ARDMPPGAEI RTAVLVTTLK ELMTKKGQRM
AFAGVEDLTA SAEVVFFPEP FAEARELLKS DQPLLLEGTL DKKADDGNGG QGQGGDDEEA
APRDIKIMGA KVMPLAMACC SSDEPVIVEL DTRRMSADYL AGLRAILEKH KGTVPVNVHM
VVDESLCLLQ LGPRWTVQPG PVFENDLNKW THGGM
|
|---|
| |