| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dvul_1504 |
|---|
| Symbol | |
|---|
| ID | 4662211 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio vulgaris DP4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008751 |
|---|
| Strand | - |
|---|
| Start bp | 1791980 |
|---|
| End bp | 1792519 |
|---|
| Gene Length | 540 bp |
|---|
| Protein Length | 179 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 639819737 |
|---|
| Product | sigma 54 modulation protein/ribosomal protein S30EA |
|---|
| Protein accession | YP_966948 |
|---|
| Protein GI | 120602548 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1544] Ribosome-associated protein Y (PSrp-1) |
|---|
| TIGRFAM ID | [TIGR00741] ribosomal subunit interface protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.235807 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.00273541 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAACATCG CATTCACGTT CAAGAACTTC GAGCCCTCGG AACACCTCAA GAAGTACGCC
CGTCGTCGCT TCGAAAAGCT CGCCCGGTTC GTCGGCAAGT CTGCCAACCT CGAGTTGCAG
GTGGCCCTTT CTCTGGACAA GTTCCGTCAG AAGGCCGAAG TCCAGCTTGT GGGCGACAGC
ATCAACATCG CCGCCGTCGA GCAGTCCGAA GACATGTACG CGACCATCGA CCTCGTACTC
GACAAGCTCG AAGCACAACT CAAGAAGCAT GTCTCCCGCG TCAAGGAAAG ACGGCGCTCT
GCCCGGACGA ATGCCAATAT CGACGTGTTC ACCTATCATA CTGAAGGTGA GGGTGAAGAC
AGGGCCATCG TGGGTACCGA CCAGTTCGTG CCCAAGCCTC TGCACGTTGA CGAGGCTGCC
ATGCAGCTTG ATGCGCTCGA TTACGAGTTC CTCGTCTTCC TGAATGCCGA ATCGGAACGG
ATCAACGTGA TCTACCGCCG CAGGAACGGC GACTTCGGGC TCATCGACCC CGTCGTCTAG
|
|---|
| Protein sequence | MNIAFTFKNF EPSEHLKKYA RRRFEKLARF VGKSANLELQ VALSLDKFRQ KAEVQLVGDS
INIAAVEQSE DMYATIDLVL DKLEAQLKKH VSRVKERRRS ARTNANIDVF TYHTEGEGED
RAIVGTDQFV PKPLHVDEAA MQLDALDYEF LVFLNAESER INVIYRRRNG DFGLIDPVV
|
|---|
| |