| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dvul_0196 |
|---|
| Symbol | |
|---|
| ID | 4662046 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio vulgaris DP4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008751 |
|---|
| Strand | - |
|---|
| Start bp | 239699 |
|---|
| End bp | 240871 |
|---|
| Gene Length | 1173 bp |
|---|
| Protein Length | 390 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 639818392 |
|---|
| Product | pseudouridine synthase |
|---|
| Protein accession | YP_965647 |
|---|
| Protein GI | 120601247 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCCCGC AGGCGATCGT CGTCACGAGG GAGGAAGCCG GACAGAAGCT GCTGCAATTC
CTTGCGCGCC GCTTCGCCTT GCCGCAGGCC ATGCTGCACC GCTGGATACG TTCCGGACAG
GTGCGGCGTA ACGGAGGCCG CTGCAAGCCC TTCGACCGTC TCGAGATGGG CGACGAGGTC
CGCGTACCGC CTTTCGCCGC ATCCATGAGC GAAAGGGCCG ACGTCGGGCC CGTCTCCGCC
AGCAGCGATG CCGTCCGGAA TGTCCCCGAC GCGGCGGCGT CACGCCCTGC ACCGTCGCGT
CATGACCGTG ACGGACATGA TGCCATGCAG CCCTCCCGCC AGCGACGCCC CAAGGCGGAC
ACGAGCCTCC AGCCCGCGCG CCCCCTGCCG CCCGTCGTGG CCGAGACGCC CGACCTCTTC
ATCTTCGACA AGCCTGCCGG TCTTGCCGTG CACCCCGGCA CGGGCCACAC CGACAGCCTC
ACCACGAGGC TGGCACAGCA TTTCGCCAAG GCCCCGTTCA TGCCCACCCC CGCCCACCGC
CTCGACCGCG ACACGTCGGG CCTTCTGCTG GTGGCGCGCA GCTATGCCAT GCTGCGCACC
CTGCACGAGG CCTTCGCCTC GCACGATGCG CTCGTGAAGG AGTACCTCGC GTGGGTGGCG
GGATGCTGGC AACCCGCAGC CCCGGTCACG CTGCACGACA GGCTGTCCAA GGGCGCCGAG
GCGTCGGGGT TCGAACGCGT CGCAAGCGAC GATGAAGGCG CGGAAGCCGC CTGCACCGTA
CGTTGCCTGT TGCGAGAACA GCACCGCAGC CTGTTGCTTG TGACCTTGCA CACCGGACGC
ACCCACCAGA TACGTGTGCA GCTGTCCCGG CGCGGGCACC CCCTGCTGGG CGACCGCAAA
TACGGCGGCC CGCCACGCAT GGGCGGCTTC CTGCTGCATG CGGTGCGCCT GTGCCTGCCT
TCCGGCGTCG TCCACACGCT CCTGCCCCGC TGGACGGGCA ACGATGCCCT GCCGCAAGGC
TTCATCCTTC CCGAACCACT CGGCCCGGTA CCGGCATCGG CAATCCATGC GGACTCGGCC
TGCCCATGCC CTCGGGCACC ATCCGACCGG GACGAAGGGC CTGACCGTGA AGAAGCCGAC
ACGGACACCG TAACCGAGGG ACGCGACGCA TGA
|
|---|
| Protein sequence | MPPQAIVVTR EEAGQKLLQF LARRFALPQA MLHRWIRSGQ VRRNGGRCKP FDRLEMGDEV
RVPPFAASMS ERADVGPVSA SSDAVRNVPD AAASRPAPSR HDRDGHDAMQ PSRQRRPKAD
TSLQPARPLP PVVAETPDLF IFDKPAGLAV HPGTGHTDSL TTRLAQHFAK APFMPTPAHR
LDRDTSGLLL VARSYAMLRT LHEAFASHDA LVKEYLAWVA GCWQPAAPVT LHDRLSKGAE
ASGFERVASD DEGAEAACTV RCLLREQHRS LLLVTLHTGR THQIRVQLSR RGHPLLGDRK
YGGPPRMGGF LLHAVRLCLP SGVVHTLLPR WTGNDALPQG FILPEPLGPV PASAIHADSA
CPCPRAPSDR DEGPDREEAD TDTVTEGRDA
|
|---|
| |