Gene Dvul_0196 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDvul_0196 
Symbol 
ID4662046 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio vulgaris DP4 
KingdomBacteria 
Replicon accessionNC_008751 
Strand
Start bp239699 
End bp240871 
Gene Length1173 bp 
Protein Length390 aa 
Translation table11 
GC content69% 
IMG OID639818392 
Productpseudouridine synthase 
Protein accessionYP_965647 
Protein GI120601247 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0564] Pseudouridylate synthases, 23S RNA-specific 
TIGRFAM ID[TIGR00005] pseudouridine synthase, RluA family 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCCCGC AGGCGATCGT CGTCACGAGG GAGGAAGCCG GACAGAAGCT GCTGCAATTC 
CTTGCGCGCC GCTTCGCCTT GCCGCAGGCC ATGCTGCACC GCTGGATACG TTCCGGACAG
GTGCGGCGTA ACGGAGGCCG CTGCAAGCCC TTCGACCGTC TCGAGATGGG CGACGAGGTC
CGCGTACCGC CTTTCGCCGC ATCCATGAGC GAAAGGGCCG ACGTCGGGCC CGTCTCCGCC
AGCAGCGATG CCGTCCGGAA TGTCCCCGAC GCGGCGGCGT CACGCCCTGC ACCGTCGCGT
CATGACCGTG ACGGACATGA TGCCATGCAG CCCTCCCGCC AGCGACGCCC CAAGGCGGAC
ACGAGCCTCC AGCCCGCGCG CCCCCTGCCG CCCGTCGTGG CCGAGACGCC CGACCTCTTC
ATCTTCGACA AGCCTGCCGG TCTTGCCGTG CACCCCGGCA CGGGCCACAC CGACAGCCTC
ACCACGAGGC TGGCACAGCA TTTCGCCAAG GCCCCGTTCA TGCCCACCCC CGCCCACCGC
CTCGACCGCG ACACGTCGGG CCTTCTGCTG GTGGCGCGCA GCTATGCCAT GCTGCGCACC
CTGCACGAGG CCTTCGCCTC GCACGATGCG CTCGTGAAGG AGTACCTCGC GTGGGTGGCG
GGATGCTGGC AACCCGCAGC CCCGGTCACG CTGCACGACA GGCTGTCCAA GGGCGCCGAG
GCGTCGGGGT TCGAACGCGT CGCAAGCGAC GATGAAGGCG CGGAAGCCGC CTGCACCGTA
CGTTGCCTGT TGCGAGAACA GCACCGCAGC CTGTTGCTTG TGACCTTGCA CACCGGACGC
ACCCACCAGA TACGTGTGCA GCTGTCCCGG CGCGGGCACC CCCTGCTGGG CGACCGCAAA
TACGGCGGCC CGCCACGCAT GGGCGGCTTC CTGCTGCATG CGGTGCGCCT GTGCCTGCCT
TCCGGCGTCG TCCACACGCT CCTGCCCCGC TGGACGGGCA ACGATGCCCT GCCGCAAGGC
TTCATCCTTC CCGAACCACT CGGCCCGGTA CCGGCATCGG CAATCCATGC GGACTCGGCC
TGCCCATGCC CTCGGGCACC ATCCGACCGG GACGAAGGGC CTGACCGTGA AGAAGCCGAC
ACGGACACCG TAACCGAGGG ACGCGACGCA TGA
 
Protein sequence
MPPQAIVVTR EEAGQKLLQF LARRFALPQA MLHRWIRSGQ VRRNGGRCKP FDRLEMGDEV 
RVPPFAASMS ERADVGPVSA SSDAVRNVPD AAASRPAPSR HDRDGHDAMQ PSRQRRPKAD
TSLQPARPLP PVVAETPDLF IFDKPAGLAV HPGTGHTDSL TTRLAQHFAK APFMPTPAHR
LDRDTSGLLL VARSYAMLRT LHEAFASHDA LVKEYLAWVA GCWQPAAPVT LHDRLSKGAE
ASGFERVASD DEGAEAACTV RCLLREQHRS LLLVTLHTGR THQIRVQLSR RGHPLLGDRK
YGGPPRMGGF LLHAVRLCLP SGVVHTLLPR WTGNDALPQG FILPEPLGPV PASAIHADSA
CPCPRAPSDR DEGPDREEAD TDTVTEGRDA