| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DvMF_3120 |
|---|
| Symbol | |
|---|
| ID | 7175066 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011769 |
|---|
| Strand | - |
|---|
| Start bp | 3940279 |
|---|
| End bp | 3941010 |
|---|
| Gene Length | 732 bp |
|---|
| Protein Length | 243 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 643541656 |
|---|
| Product | 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase |
|---|
| Protein accession | YP_002437524 |
|---|
| Protein GI | 218888203 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0106] Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase |
|---|
| TIGRFAM ID | [TIGR00007] phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 57 |
|---|
| Fosmid unclonability p-value | 0.00539307 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGATCCTGT TCCCCGCCGT GGACATCAAG GACGGACGCT GCGTGCGACT GCGGCAGGGC
CGCGCCGACG CGGAAACCGT GTTTTCCGAC GACCCCGCCG CCATGGCCCG CCACTGGCAG
GACCAGGGGG CCAAGTGGCT GCACGTCATC GACCTGGACG GGGCCTTCAG CGGCATGCCC
GCCAACTTCG AACTGATCCG CCGCATCTGC GCCGACCTTT CCGTGCCGGT GCAACTTGGC
GGCGGCATCC GCGACGAGGC CACGGCGAAA GCCTACCTCG ACGCCGGGGT GGAACGACTG
ATCATCGGCA CCGTGGCCCT GGAGGAACCG GACCTGTACG CCCGCCTGTG CGCCACCTTT
CCGGGGCGCA TCGGGGTTTC GCTGGATGCC GAGGGCGGCA GGCTGAAGAC CAAGGGCTGG
GTGGCCGATT CCGGCCTGAC CGTTGACGAC GTGCTGCCCC GCCTGCTGGC TGCGGGCACC
GCCTTCGTCA TCTACACCGA CATCGACCGC GACGGCATGC AGACCGGGGT GAACCTGTCC
GCGCTGGAGC GGCTGGCGGG CATGTGCCCG GTGCCGGTCA TCGCGGCGGG CGGCGTGGCC
ACGCTGGAAG ACGTGCGGGC GCTGTACCCG ATGACGCTTA CCTCAAGCGT GGAAGGGGCC
ATCACCGGAC GGGCCATTTA CACCGGCACC CTCGACCTGC ACGCGGCCAT GGAGTGGATT
GCGGCGCAGT GA
|
|---|
| Protein sequence | MILFPAVDIK DGRCVRLRQG RADAETVFSD DPAAMARHWQ DQGAKWLHVI DLDGAFSGMP
ANFELIRRIC ADLSVPVQLG GGIRDEATAK AYLDAGVERL IIGTVALEEP DLYARLCATF
PGRIGVSLDA EGGRLKTKGW VADSGLTVDD VLPRLLAAGT AFVIYTDIDR DGMQTGVNLS
ALERLAGMCP VPVIAAGGVA TLEDVRALYP MTLTSSVEGA ITGRAIYTGT LDLHAAMEWI
AAQ
|
|---|
| |