| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DvMF_2427 |
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| Symbol | |
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| ID | 7174361 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011769 |
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| Strand | + |
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| Start bp | 3064461 |
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| End bp | 3066029 |
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| Gene Length | 1569 bp |
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| Protein Length | 522 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 643540957 |
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| Product | type III secretion apparatus protein, YscD/HrpQ family |
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| Protein accession | YP_002436836 |
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| Protein GI | 218887515 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR02500] type III secretion apparatus protein, YscD/HrpQ family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 90 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGCGT CCACCACCGC ATTGCTGCGC ATTTTCACCG GCCCCCACGT GGGGGCTGAG
GTCGTTTTGC CCGAAGGCGT CCATGTCGTC GGTACGGACG ATTCGTGCGA CATCATCCTG
AGCGATGCGG CCCTGGCCGC GCGGCATGCC GCGCTGACCG TGGCGACGCG CGGGGAAGGG
CCGGGGGCCG CGACCGAAGT GCATGTGGCG CCGCTGGACG GCGCCGTGCG CGCGGGCGAT
GCCGAAATTC CGGCCCAGGG TGCCCCGCTG GCGGCGGGCA CGGGCTGCTG GCTGGGCGAT
ACCTGCCTTG CCTGGAACCG GCCCGGCGCC GAATGGGGCG ACGTGCTGGC CCGGCCCCGT
GCGGGCGGCG AGGGCGGCGG CCCCGTTGAT GCCACCCCGC AACCTTCCGC ACCAGCCGAA
GATATTTCCA GCGGCGTCGC GCCCGGTGAT GCCACTCCCG GCGCTCAGCC AGCGCCAACG
AAGTCGCAGG ATTCGCCCGC TGCGGATGCC CACGATGTTG GCGGCCTGAC CCTGCCCGGC
GGCACCGTTG CCGTTCCCCC ACCCCGGCGT GGCAGATCCG TTGTGGCGGG CCTGCTGGCC
CTGGTGTGCG CCGTCGCCAT CGTCGTCACC GTTGAAACGC GCCCGCCAGC CCCCGCCGAA
CGTGTGGCCG CCGTGGAGGA AGCCCTGCGC GGCGCCGGGG TGACCAGCCT GGAGGTGGCC
TCCGGCGACG GCGGCGTGGT GGTGCGCGGG CTGCTGGACA ACGACGGCCA GCGCGCCGCC
GTGTGGAAGG TGGCACGGAA CCTGCTGTAT CCCGTCCAGA TAGATGTGGC CGTCCGCGAC
GACGTGGTGC ACGCGGTGCA GGCGGCCTTC AACAGCAGGG CACTGTATCC GGAGGTCGAG
TTCATGGACG CGCAGTCCGC CGCACGGCAG CAGGGCGAAG CGCCTGCCCC CCTCAAGGTG
GCCGGCTATG TCCGGGACGG ACTGGTGGAG GCCTGGGCCT TCAGCGCGCT GCGCGACGAC
GTGCCCAGTC TGCCCCCGGT GGCCCGCGAC ATCCGCTACG CCAGCGACGT TGCGCCCGTG
CTCGACGGGC TTCTGGGCGG CGCGGGGCTG CGCCATGTGC AGGTGCGCTA CCTGCCGGGC
ACCGTGGAAC TGGCGGGCGA CCTGGATGCG CGCCAGCGCG AACGGCTGGA CGAGGTGCTG
GCCTATGCCC GCGCCCATCT GGGGGTGCCC GTGCGGTTTG CGGTGGTGCG CGCCGCTCCG
GTGGTGCAAC CCGTGGCGGC GCAGTCGGGC GGACGCCCGC AGCCTGCGTT GTCGGCAGTC
TCCGGCCCGG TTGCGGCCTC CGATTCGGCG ATGGCCGCCG CGCAGGCTGG CGACCCGCTG
GAGGGATTGC AGGTGCGCGG CGTGACCCTG AACCCGTTGC GCTTCGTCAC CATCGGCGAC
GGGCAGCGCA TTTTCGAGGG CGGCATGCTG CCCGGCGGCT ACGTGCTGGA GTCGATTTCC
ACAAAGGAAC TGCATTTGCG CAAGGATGGA CGTTCAACCA CCTACCGGCT GCGAGGTAGC
CATGAGTGA
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| Protein sequence | MSASTTALLR IFTGPHVGAE VVLPEGVHVV GTDDSCDIIL SDAALAARHA ALTVATRGEG
PGAATEVHVA PLDGAVRAGD AEIPAQGAPL AAGTGCWLGD TCLAWNRPGA EWGDVLARPR
AGGEGGGPVD ATPQPSAPAE DISSGVAPGD ATPGAQPAPT KSQDSPAADA HDVGGLTLPG
GTVAVPPPRR GRSVVAGLLA LVCAVAIVVT VETRPPAPAE RVAAVEEALR GAGVTSLEVA
SGDGGVVVRG LLDNDGQRAA VWKVARNLLY PVQIDVAVRD DVVHAVQAAF NSRALYPEVE
FMDAQSAARQ QGEAPAPLKV AGYVRDGLVE AWAFSALRDD VPSLPPVARD IRYASDVAPV
LDGLLGGAGL RHVQVRYLPG TVELAGDLDA RQRERLDEVL AYARAHLGVP VRFAVVRAAP
VVQPVAAQSG GRPQPALSAV SGPVAASDSA MAAAQAGDPL EGLQVRGVTL NPLRFVTIGD
GQRIFEGGML PGGYVLESIS TKELHLRKDG RSTTYRLRGS HE
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