Gene DvMF_0977 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDvMF_0977 
Symbol 
ID7172871 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio vulgaris str. 'Miyazaki F' 
KingdomBacteria 
Replicon accessionNC_011769 
Strand- 
Start bp1184879 
End bp1185538 
Gene Length660 bp 
Protein Length219 aa 
Translation table11 
GC content65% 
IMG OID643539482 
ProductRibulose-phosphate 3-epimerase 
Protein accessionYP_002435400 
Protein GI218886079 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0036] Pentose-5-phosphate-3-epimerase 
TIGRFAM ID[TIGR01163] ribulose-phosphate 3-epimerase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones70 
Fosmid unclonability p-value0.213833 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCCTTT CCCCTTCGTT GCTGTCCTCC GATTTCGGTC GTCTGGCCGA TGAACTGGCC 
GCCCTGGAAG CCGCCGGGTT GTCCTGGGTG CACTGGGACG TCATGGATGG CACCTTCGTG 
CCCAACATCA CCTACGGCCA GCCGGTCATT GCCCATTTGC GCAAGCAGAG CCGCCTGTTC 
TTCGACGTGC ACCTGATGGT GGAACGCCCG GAACGCTACC TGCACGAATT CGTGGATGCC 
GGGGCCGACA TGCTGGTGGT CCACGCAGAG GCCACCCCCC ATGTGCAGCG CGCCCTGGCC 
GAAATCCGCC GCCTGGGCGT CAAGTCCGGC GTGGCGCTGA ACCCGCATAC TCCGCTTTCG 
GTGCTGGACT ACGTGCTGGA CGACGCGGAC ATGGTGCTGA TCATGACCGT CAACCCCGGC 
TTCGGCGGCC AGTCGTTCCT GCCCGCCAGC TACCGCAAGA TCAGCGAGTT GCGCGCCATG 
ATCAACGCGC GCGGCCTGTC CACGCTCATT CAGGTGGACG GTGGGGTGGA CCCGTCCAAC 
ACCGCGAAAC TGGTGCAGAG CGGGGCGGAC GTGCTGGTAT CCGGCTCGGC CTTCTTCAAG 
TTTCCGCCCT ATGCCGAGCG GTTGAAGGCC TTCGAGGCAG CCGCCAATTC CGTCCTCTAG
 
Protein sequence
MILSPSLLSS DFGRLADELA ALEAAGLSWV HWDVMDGTFV PNITYGQPVI AHLRKQSRLF 
FDVHLMVERP ERYLHEFVDA GADMLVVHAE ATPHVQRALA EIRRLGVKSG VALNPHTPLS 
VLDYVLDDAD MVLIMTVNPG FGGQSFLPAS YRKISELRAM INARGLSTLI QVDGGVDPSN 
TAKLVQSGAD VLVSGSAFFK FPPYAERLKA FEAAANSVL