Gene DvMF_0488 details

Gene Information

• Locus tag: DvMF_0488
• ID: 7172375
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Desulfovibrio vulgaris str. 'Miyazaki F'
• Kingdom: Bacteria
• Replicon accession: NC_011769
• Strand: +
• Start bp: 572455
• End bp: 573030
• Gene Length: 576 bp
• Protein Length: 191 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 643538988
• Product: 50S ribosomal protein L25/general stress protein Ctc
• Protein accession: YP_002434913
• Protein GI: 218885592
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG1825] Ribosomal protein L25 (general stress protein Ctc)
• TIGRFAM ID: [TIGR00731] ribosomal protein L25, Ctc-form

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 55
• Fosmid unclonability p-value: 0.00113993
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGTCCGAAT TGAAGACCCT GAGCGTGCGC AAGCGCGACG GCCTCGGCAA GGGCGCCAAC 
CGCAAGCTGC GGGCCAAGAC CCTGGTTCCC GGTGTGTTCT ACAACGCCGA AGGCCTGAAC 
GTGCCGATCG AAATGGACAC GCTGCCCGTC GAAAAGCTGT TCGAAGCCGT TGGCCGCACC 
ACCGTCTTCA ACATCGAGGT CGATGACAAC GGCACCAAGT CCACCCACCC GGCGCTGTTC 
TGGCAGATCC AGTACCACCC GGTGAAGAAC CGCTTCTCGC ACATCGATTT TCGCGGCGTT 
GACCTGGAAA AGCCCGTCAA GATCCGCGTG CCCCTCGAAT TCACCGGCAC CGCCAAGGGC 
GTGAAGGTGG GCGGCAAGCT GGAAGTGTAC CGCGAAGCGC TGGACATTTC CGCCAAGCCC 
CTGCAGATGC CCAGCAAGAT CACCATCGAT CTGACCGACC TCGAAATCGG CAAGACCATC 
AGCGTGAACG ACCTGCCCCT GGGCGAGGGC GTCTGCGCCG TTGCCGACCG CAACTTTGCC 
ATCGTGGCCG TTGTTTCGCC CAAGGGCGAA GAATAG 

 

Protein sequence

MSELKTLSVR KRDGLGKGAN RKLRAKTLVP GVFYNAEGLN VPIEMDTLPV EKLFEAVGRT 
TVFNIEVDDN GTKSTHPALF WQIQYHPVKN RFSHIDFRGV DLEKPVKIRV PLEFTGTAKG 
VKVGGKLEVY REALDISAKP LQMPSKITID LTDLEIGKTI SVNDLPLGEG VCAVADRNFA 
IVAVVSPKGE E