| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DvMF_0211 |
|---|
| Symbol | |
|---|
| ID | 7172091 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011769 |
|---|
| Strand | + |
|---|
| Start bp | 232341 |
|---|
| End bp | 235571 |
|---|
| Gene Length | 3231 bp |
|---|
| Protein Length | 1076 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 643538709 |
|---|
| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
|---|
| Protein accession | YP_002434639 |
|---|
| Protein GI | 218885318 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 58 |
|---|
| Fosmid unclonability p-value | 0.0293553 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGGCGTT CGCGCCTGTT CGGGCGTACC CTGCGGGGAC TCATCGTGCT GTTCGGGGTA
TACGCCGCCG TCACGTCCAT CTATTCCGGC TGGACCCTGC ACACCCTGCT GATCCGTGAA
TACGAAAGCA AGGCGCTGGC CATCGCCCGC GCCATCGCCG GGGCGGACCT GGAAAGCCTG
ATCGGGCGCG ACGTGACCAC CGTGCAGTCG CGCATCGACC AGTTTCTGGG CATCGACGGG
GTGTCCTACG TGCTGGTGGC GGACGGCCGG GGTGAAACCG TGGCCCACAC CTTCGTGCCC
GTGGTGCCGG AGCCGGTGCG CGAACTGGTG GCCTCGCTGG CGGGTGTGCG CATGAACGAG
GTCACCGTGC TGCGCGATCG GCTGTCCCTG CCCCGCCCCC AGGGCGGTGC GTCGGGCGGG
GGCGGGCGCG AGGTGATGCA CGTGACCATG CCGGTCTTTG CTGGCGTGGG CGGCTTTGTC
CACATCGGCA TGGACCGGGG GCGCATCAGC GACTACATCG ATGGCGCCAT CCTGCGCCAG
CAGGGGCTGG GGTTGGCCTT CTTCGCCGCG TGCGCCGTGG GGGCATGGAT GCTGCTGTAT
TCCATCTCGC GGCCGCTCAT GCGCCTGACC GACCAGGCCC GCCGGGTGGC TGTGCACGAT
TTTTCGGCCC CGCCGGACCT GCCCGCCATG AAGGCCGACG ACGAGATCGG CGACCTTTCC
CGCGCCATGC ACACCATGTC CCGCGACCTG GCCGGGCTGG TGGAGGGGCT GGAGGATTCC
GTGCGCCAGG CCACGGCGGA ACTGGGCGGC GCGCTGGAAC AGCTTTCCAC CATCGTGGCG
GGCATGGCCG ACGGCCTGCT GGTCACCGAT CCGCAGGGCC TGGTGCTGCG CAGCAACGCG
GCCCTGTGCG AGATGTTCGG CCTGGACGCA GACCCCGACG GCAGGTCGGT GTGCGAGGTG
TTCGGCTTCG TGGCGCCCGC CGTGCGGATG GTGGGGGACG GCATTCACGA GTTTGCCTTC
GAGACGGAGG ACGGCGAGGA CATCGTGCCC GAGGCCGTGG TGCGGGACAA CGCGGCGCTG
CTGGCCTTCC TGGACGGGGC CGACGTGCCC GGCCAGCCCA TGACCGGCGT GTCCTGCACG
CTGCCCGGAC CGTCCGGGGC GTTGGCCGCC AGGCCAGTCA CCGGGCCAGA TCAGGGCCTG
CCGCAGGGCG CGCCATGCCC GTCGGGTACC GGCACGGCCC TGCGTTCGGG CGAGGTAGCC
GCCGTGCGGC GCGACGGCAC ACCCTGCTGG GTGGAGCTTT CGCTGGTGCG GCGGCAGGTG
ATGGGCACCA CCTACGGCAT CTGTCTGGTG CGCGACGTGA CCGAGCGCCG CCGCGCCCAG
GAAGCGTTGC ACCGCGCCCA CGGCATGCTG GAGCGCAAGG TGCGCGAGCG CACCCGCGAA
CTGAGCCGCG CCAATGCCCA ACTGATGCTG GAAAACGCCG AGCGTCGCAC CGTGGAGCAG
GCCCTGCGCC GGGCCGAGGC GCGCTTCCGG GGCATTTTCG AGCATGCCCT GGAAGGCATC
TTCCAGAGCA CGCCGGAGGG GCGCTTTCTG AGCGTCAACC CGGCCATGGC CCGCATTCTG
GGCTACGAAG GGGTGCAGGA ACTGCTGGAG GGCGTGGAAT CCATCGGGGA CGGGGTCTAC
GCGGACCCGG CCCGGCGCGA CGAGTTCGTT GCCCGCATGG AGGAGCATGG CCAGGTCAAC
GCCTTCGAGT TCCGGGGGCG GCGCAAGGGG GGCGACCTGA TCTGGCTGTC GGTGAATGCC
CGGCGGGTGC CGGGGGCCGA CGGGGCCACC ATGTACTACG AGGGCTTTCT CGAAGACGTC
ACCATGGGCC ACGAAAGCCG CGAGCGGCTG GAACATCAGG CCTTCCACGA CCCGCTCACC
GGGCTGCCCA ACCGCGTGCT GTTCCACGAC CGGCTGCAAA TGGCCCTGAA GCGCGCCGCG
CGCCGCCGCA ACTACACCTT TGCCATGCTG TACCTGGACC TTGACCGGTT CAAGGTCATC
AACGACAGCC TTGGCCACGA CGTGGGCGAC GCATTGCTGA AGGTGGTGTC CGCCAAGCTG
CGCGAATGCG TGCGCGACGT GGATACCGTG GCCCGCTTCG GCGGCGACGA GTTCGGCGTG
CTGCTGGAGG AAACCCCCAC GCGCGGCACG GCGGTGCGCG TGGCCCGGCG CATCCGGGCG
CACCTGGCGG AGCCGGTGCG CATCGGCCCG CACGAGGTGT TCACCACGGC CAGCATCGGC
ATCGTGCTGC GCACCGACCA GTACTCCACG CCGGAAGAAC TGGTGCGCGA CGCGGACACC
GCCATGTACC GCGCGAAAGA GCAGGGCCAG TCGCGCTTCA AGGTGTTCAA CAAGCGCATG
CGCGAAGAGG CGCTGCGCCT GCTGACCATA GAAACCGACC TGCGCCGCGC CGTGGAGCGG
CAGGAAATGC GCCTGCATTA CCAGCCCGTG GTGGCGCTGG AAGACGGCGG CCTGCACGGG
GTGGAGGCGC TGCTGCGCTG GACGCGTACC GAAGGGGGCG ACATCTCGCC CGCCGAGTTC
GTGCCCGTGG CCGAGGACAC CGGGCTTATC ACCTCCATCG GGGCTTTCGC GCTGGAAGAG
GTGTGCCTGC AACTGCGCCG CTGGAACGAA GCGGGACTGC CGCCGCCGGG TGTGGTGCAC
GTGAACATTT CTGGCCGCCA GTTCATGCAG CCGGGCCTGC CCCACGCCGT GGAGATGCTG
CTGGAACGCA CCGGCACCGA CCCGCGCTCA CTGCGCTTCG AGGTGACCGA AAGCGTGCTG
ATGCGCCACG GCAGCCAGGC CATCACGGTC ATGGCCCAAC TGCGCGATCT GGGCATCCGG
CTGTGCCTGG ACGACTTCGG CACCGGCTAT TCCTCGCTGG GCTACCTGAA GCGGCTGCCG
GTGGATTCCA TCAAGATCGA CCGCAGCTTC GTGGCCGGTC TGGAGCACGA CCGCGACGGG
CAGGCCATCG TGCGCTCCAT CGTCTCGCTG GGGCTGCACC TGGGGCTGGA GATCGTGGCC
GAAGGGGTGG AAACGCCCAC TCAGGCGGAA ATGCTGGCTT CGCTGGGTTG CCGGTATGCC
CAGGGTTTTC TGTACGCGCC GCCTGTTTCG GCGGACGATC TTGCCGCCAT GCTGGACGCT
ACGCCGTTTC CGTCCACCGG GGGTGGTGTT TTCGTGGGTG GTTCGGTATA G
|
|---|
| Protein sequence | MRRSRLFGRT LRGLIVLFGV YAAVTSIYSG WTLHTLLIRE YESKALAIAR AIAGADLESL
IGRDVTTVQS RIDQFLGIDG VSYVLVADGR GETVAHTFVP VVPEPVRELV ASLAGVRMNE
VTVLRDRLSL PRPQGGASGG GGREVMHVTM PVFAGVGGFV HIGMDRGRIS DYIDGAILRQ
QGLGLAFFAA CAVGAWMLLY SISRPLMRLT DQARRVAVHD FSAPPDLPAM KADDEIGDLS
RAMHTMSRDL AGLVEGLEDS VRQATAELGG ALEQLSTIVA GMADGLLVTD PQGLVLRSNA
ALCEMFGLDA DPDGRSVCEV FGFVAPAVRM VGDGIHEFAF ETEDGEDIVP EAVVRDNAAL
LAFLDGADVP GQPMTGVSCT LPGPSGALAA RPVTGPDQGL PQGAPCPSGT GTALRSGEVA
AVRRDGTPCW VELSLVRRQV MGTTYGICLV RDVTERRRAQ EALHRAHGML ERKVRERTRE
LSRANAQLML ENAERRTVEQ ALRRAEARFR GIFEHALEGI FQSTPEGRFL SVNPAMARIL
GYEGVQELLE GVESIGDGVY ADPARRDEFV ARMEEHGQVN AFEFRGRRKG GDLIWLSVNA
RRVPGADGAT MYYEGFLEDV TMGHESRERL EHQAFHDPLT GLPNRVLFHD RLQMALKRAA
RRRNYTFAML YLDLDRFKVI NDSLGHDVGD ALLKVVSAKL RECVRDVDTV ARFGGDEFGV
LLEETPTRGT AVRVARRIRA HLAEPVRIGP HEVFTTASIG IVLRTDQYST PEELVRDADT
AMYRAKEQGQ SRFKVFNKRM REEALRLLTI ETDLRRAVER QEMRLHYQPV VALEDGGLHG
VEALLRWTRT EGGDISPAEF VPVAEDTGLI TSIGAFALEE VCLQLRRWNE AGLPPPGVVH
VNISGRQFMQ PGLPHAVEML LERTGTDPRS LRFEVTESVL MRHGSQAITV MAQLRDLGIR
LCLDDFGTGY SSLGYLKRLP VDSIKIDRSF VAGLEHDRDG QAIVRSIVSL GLHLGLEIVA
EGVETPTQAE MLASLGCRYA QGFLYAPPVS ADDLAAMLDA TPFPSTGGGV FVGGSV
|
|---|
| |