| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DvMF_0135 |
|---|
| Symbol | |
|---|
| ID | 7172010 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011769 |
|---|
| Strand | - |
|---|
| Start bp | 150436 |
|---|
| End bp | 151254 |
|---|
| Gene Length | 819 bp |
|---|
| Protein Length | 272 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 643538629 |
|---|
| Product | Haloacid dehalogenase domain protein hydrolase |
|---|
| Protein accession | YP_002434564 |
|---|
| Protein GI | 218885243 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0546] Predicted phosphatases |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 72 |
|---|
| Fosmid unclonability p-value | 0.292 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCCGCC GCACGCTGCA TTGCGCCGGG GTGGCCGTGC GCGCCGTGGT CTTCGACTTC
GACGGCACCC TTGCCGCGCC CACGCTGGAC TTCGGCCTCA TGCGCCGTAC CGTGGCGGAG
GCCATGCGGG TGCACCTGGA GCCGCCGCAA CGCCCGAATC CGCCGGACAT GCCCCATCAA
ACGGGGCTGG CGGGCCAGGC GGGACAAGCG GGTCCAACAG AGCTGGCGGA ACTGCCGGGG
CCGACGAGAC TTCCCGACAG GCGTGACCTG CCGGTGATGG AATGGATCGC CCACGTGGCG
GGCCTGCTGG AAACGCATGG CCGCCGCGAC GACGCAGCCG CCCTGCACGC CGATGCCCAC
GCCGCCATCC GCCGCGTGGA GGTGGAGGCC GCCGCGCGGG GCAGCCTGTT TCCGTTCACC
CGCCCCATGC TGGCAGCGCT GTCCGCCATG GACGTTGCCG TTGCCATCGT GACCCGCAAC
TGCCCGGAGG CGGTGCGGGC CGTGTTTCCC GACGTGGACG CCCTGTGCCC CTGCCTGCTC
ACCCGCGACG ACGTGCCCAG CGTAAAGCCA GACCCGGACC ACCTGCTGCG CGCGCTGGGC
ATGCTGGGCC GCGCCCCCGC AGAGGCGCTG ATGGTGGGCG ACCACCCCAT GGACATCGTG
ACCGGGCACC GCGCGGGCAC CCTGACCGCC GGGGTGGCCA GCGGCGAAAG CCCTGCCCGC
GCGCTGCACG AGGCCGGGGC GCACGTGGTG GCCAACGATT GCGCGGCGCT GATGGTGCAT
CTGGGGCTGA CCGAAGCGGA TTCCGAGACG CCGGGTTAG
|
|---|
| Protein sequence | MARRTLHCAG VAVRAVVFDF DGTLAAPTLD FGLMRRTVAE AMRVHLEPPQ RPNPPDMPHQ
TGLAGQAGQA GPTELAELPG PTRLPDRRDL PVMEWIAHVA GLLETHGRRD DAAALHADAH
AAIRRVEVEA AARGSLFPFT RPMLAALSAM DVAVAIVTRN CPEAVRAVFP DVDALCPCLL
TRDDVPSVKP DPDHLLRALG MLGRAPAEAL MVGDHPMDIV TGHRAGTLTA GVASGESPAR
ALHEAGAHVV ANDCAALMVH LGLTEADSET PG
|
|---|
| |