| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dtpsy_2848 |
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| Symbol | |
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| ID | 7384959 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax ebreus TPSY |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011992 |
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| Strand | - |
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| Start bp | 3030320 |
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| End bp | 3032212 |
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| Gene Length | 1893 bp |
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| Protein Length | 630 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 643656157 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_002554282 |
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| Protein GI | 222112018 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.411531 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCATCG ACGGTGATGG CGCAGGCGCC GGCCACGGCC TCAACCTACC GACGCCCTAC
CGACGCGCCA TGGATTCCTT TGCCCCTGCC GCCCGCCCCC GGTCCGAGGA CGGCGTGACG
CACCCGCCGC CCCATCGGAC CGATGACGCC TCCGACGACA GTGCGGCGGC CTTCCTGCAG
CGCATCGGCA GCCTGCGCGC GGGCACGCTG GAGCGCGCTG CCATGGATGC GGCGCCCGAC
GGCATCGTGC TGGCCGACCG ACAGGGCCGC ATCCTCATGG TCAACGCCCC CATGGAGACC
ATCAGCGGCT ACACCAACGC GCAGTTGTGC GGCCAGTCCA TCGACCTGCT GGTGCCGGTG
CACGCGCGGC CCGAGCATGG CCAGCATATG CAGCGCTACC ACCAGTCTCC CAGCCGCCGG
CCCATGGGCA TGGGGCGCGA CCTGTGGTTG CAGCGACGCG ACGGTAGCCA GGTGCCGGTG
GACATCGCCC TCGGCCATTC CTCCGCCCAC GGGGGCACGG TGGTGGCTTT TGTGCGCGAC
GTCTCCGACC TGCGGCGCCT GGAGGCGCGT ATGCACTACC AAGCCACGCA CGACACGCTG
ACCGGTCTGC TCAACCGCTG GAAGTTCGGC CAGCGGCTGG AACAGGCGAT CGCGGAGCAG
GCGGCAGCGC AAAGCCCGCC CTTCGCGCTG CTGCTGCTCG ATCTGGACGA CTTCAAGGCC
ATCAACGATG GCTACGGCCA TGCCGCCGGC GACCAGGTGC TGCAGGAGGT GGCGCGGCGC
CTGCGGGGTG CGCTGGGCAC GGGCGACATC CTTGCGCGCC TGGGCGGCGA CGAGTTCACC
GTGCTGTTGC CCGGGGTGGC CTGCGCCACG CAGGCCGAGT GCGTGGCCGC GCGGCTGATG
CAGGCGCTGT GCGTGCCCTG CCGCGTGCAG GGGTTCGAAC TGAACTTCGG CGCCAGCATG
GGCATCGCGC TGTGTCCGCA GGATGCGGGC GACGCCGCCA CGCTGCTGCG CTATGCCGAC
ATGGCCATGT ACCACGCCAA GCACCGCGGG CGCGCCAACT TCGCGTTCTA CGCTCCGTCC
ATGGGCCGCA AGATGGCCGA GAAGATCCAG TTGCACGACC GGCTCAAGCT GGCGCTGGCC
TACGGCGGGC TGACGCTGCA TTACCAGCCG CAGGTCGAGG TGGCCACCAA CCGCATGGTG
GGTGTGGAGG CCCTGCTGCG CTGGCACGAC CCGCAGCTGG GCGAGGTGTC GCCCGAGCGC
TTCGTGCCCG TGGCGGAGGC CACGGGACTG ATCCTGGAGT TGGGCGCCTG GGTCATGGCC
GCGGCCTGTC GCCAGATCGC GGCGTGGGAG CGCCAGGGCA TGCGTTTGCG CGTGGCGGTG
AACCTGTCCG CCCAGCAGCT GCGGCAGACC GACCTCGTCG AGCAGGTGGC GCGCAACCTG
CGCACCCACC ATGTCCCGCC CGAGTTGCTG GAACTGGAGG TGACCGAGTC CGAAGCCCTG
GCCGACCCCG AGCAGGCCTG CCAGGTGCTG AACGAGCTGC GCGCGCTGGG CGTGGCCGTG
GCGCTGGACG ACTTCGGCAC GGGCCACTCG TCGCTGGCCT ACCTCAAGCG CCTGCCGGTG
TCGCACATCA AGGTGGACCG GGAATTCATG CGCAACGTGC CTGCCAGCGG AGGCGACACC
ACGCTGGTGC GCGCCGTGGT CGCGCTGGCG CACACCATGG GGCTGCGGGT GGTGGTGGAG
GGGGTGGAAA CACGCGAGCA GCTGCAGTTT TTGCGCGAGA TGCAGTGCGC CTGCTACCAG
GGCTGGCTGT TTGCCAAGGC GCTGTCGCCC GACGACGTGG CGCTGCTGTA CGCGGCCGCT
GCCGACGCGG CGGCGGAAGG CGCGCTGGGC TGA
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| Protein sequence | MRIDGDGAGA GHGLNLPTPY RRAMDSFAPA ARPRSEDGVT HPPPHRTDDA SDDSAAAFLQ
RIGSLRAGTL ERAAMDAAPD GIVLADRQGR ILMVNAPMET ISGYTNAQLC GQSIDLLVPV
HARPEHGQHM QRYHQSPSRR PMGMGRDLWL QRRDGSQVPV DIALGHSSAH GGTVVAFVRD
VSDLRRLEAR MHYQATHDTL TGLLNRWKFG QRLEQAIAEQ AAAQSPPFAL LLLDLDDFKA
INDGYGHAAG DQVLQEVARR LRGALGTGDI LARLGGDEFT VLLPGVACAT QAECVAARLM
QALCVPCRVQ GFELNFGASM GIALCPQDAG DAATLLRYAD MAMYHAKHRG RANFAFYAPS
MGRKMAEKIQ LHDRLKLALA YGGLTLHYQP QVEVATNRMV GVEALLRWHD PQLGEVSPER
FVPVAEATGL ILELGAWVMA AACRQIAAWE RQGMRLRVAV NLSAQQLRQT DLVEQVARNL
RTHHVPPELL ELEVTESEAL ADPEQACQVL NELRALGVAV ALDDFGTGHS SLAYLKRLPV
SHIKVDREFM RNVPASGGDT TLVRAVVALA HTMGLRVVVE GVETREQLQF LREMQCACYQ
GWLFAKALSP DDVALLYAAA ADAAAEGALG
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