Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dtox_2979 |
Symbol | |
ID | 8429969 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfotomaculum acetoxidans DSM 771 |
Kingdom | Bacteria |
Replicon accession | NC_013216 |
Strand | - |
Start bp | 3165891 |
End bp | 3167762 |
Gene Length | 1872 bp |
Protein Length | 623 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 645035233 |
Product | CRISPR-associated protein, Crm2 family |
Protein accession | YP_003192356 |
Protein GI | 258516134 |
COG category | [R] General function prediction only |
COG ID | [COG1353] Predicted hydrolase of the HD superfamily (permuted catalytic motifs) |
TIGRFAM ID | [TIGR02577] CRISPR-associated protein, Crm2 family |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
|
Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.113889 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAGTAAGA AAATTCTTCA TTTTACACTC GGCCCGGTAC AGAGTTTTGT CGCCCAGGCC CGGCGGACCC GCGATCTCTG GGCCGGCTCA TTTATACTCT CATATCTGGC CGGACAGGCT ATGTATTTAG TACACAGAGC CGGGGGAAAG ATAATTTTTC CTGCTGTATA CGATAATAAC GGGATTATAA ATGATCCACT GCTGAATGTA ATAGCCGACA AAAATGAGGG AAAGCCGATA AGTAAAAAAC CTGTTGCCGG TACTTTACCC AATCGCTTTA AGGCTGAGAT TCCCGGTGAA TTTAAGCCTG TTGAATGCAG GCAGGCAGTA ATAAGTGCCT GGAGAGAAAT AGCCGGTGCA GTATGGAATA AGTATATAGA ACCAGTGGCT ATCTATGGGA AAGGTACTAA AGAAATATGG GAGCGCCAGG TAAATAATTT TTGGGAAGTA TCCTGGGTGG TTAGTGATAA TGCAGAAAGT GATGATTTAC TTGACCGGAG GAAAAATTGG CGCAGTTATG TGCAGGCTGA GGAACCTGGT GATAAATGTA CTATCATGGG TAATCTTCAG GAACTTTCAG GTCATACCCG TTCCTTAAAT AGTAAAAAAC AGGATGAATT TTGGGGGGAA CTGCGTAAAA AAGTTAAAGC GTTGGAGTTA CGAAAAGATG AGCGGCTCTG TGCCGTGACT ATAATCAAAC GACTATTCCC CTTTACTGCA AAAACAGTAT TGGGGTGGGA TGTCCCAACA AGTTACCCCT CAAATTCGAA TATCTCGGCA GTTCACTGGG TAGAAAAGGT AATGCAAAAT GATACTGAAA AGGTTGTAAA TTTTTTAGAA TATTCGCGCA ATTGCGGCCT GGCTCCGGAA GGCGGTAAAC AGTCAGCCCA AATTTACTGC TTGCGGCAGA TGCAAAAAGA AAAACCGGAA ATAGCGGCGT TTGCAAAATT AAACGGCAAT TTGTTTTTTG AAAGCACTTT ACAAAATGAT AATCTCTGGG ATGAAAGTAT TAAGGAGCAG AGAAAACATT TAACGAAGTT ACTGAAGGAA TTTAAGCAGT CGCCCGAACC TTTTTATGCC GTTCTAATAA TGGACGGCGA CTCTTTAGGG AATTTGCTGC GAATTAATGA CAGTGCGGAA GTGAGCCAGG CGTTGTCACG TTTCAATGAC ATGGTTCCGA AAATACTGGA ACAAAATAAC GGTGTCCTGG TTTATGCCGG CGGTGATGAT GTTCTGGCTC TTTTACCACT GGAAGATGCT ATCAAGACAG CAGTAGAAAT ATCCAGGGCT TATTCCAATA GTTTTAGTGG TAGATTGGCA AATGGGGAGG CTACAATTTC TGCGGGTATT GTTTATGCCC ACAACCACGC ACCCTTAAAG TCCATATTAC AAGAAGCACA CCGATTGCTG GATGAAATAG CAAAAGAAGA AACCGGGCGC TCCAGCCTGG CTGTTAGTGT CTGGAAAACT GCCGGCCGGG TATTACAGTG GTCTGCTCCC TGGGAAGTAA TAACAAGTGG GGATAGTTGT TTGGTGGATG AATTGGTAGA GGATTTTCGG GGAAAGTCCA GTTATGAGGA TCAATACAAC AGCTCATTCT TTTATAACCT TCGCAAGCGT TTTGATTGGT TGTCCGGAGA CAATAATATT TTAACTTTTG AGGAAGCAGT TGACCTGTTG GCAGCGGAAT ACCTTAAAAA CCGCGGGCGT GAAAATATTG CTGAGGCTAC AGCAAAAAGC CGGGTCGAAA AATTATTAAT GTTTTGTCGA AGGTTTTTAC GCGGGCCTGA TGGAGTACAG TCTTTAAATA AACTGAATGT AGACGGGGCC CTTTTAGTTC GTTTTTTGGC CGAAAAGGGG GTTGTGGAAT GA
|
Protein sequence | MSKKILHFTL GPVQSFVAQA RRTRDLWAGS FILSYLAGQA MYLVHRAGGK IIFPAVYDNN GIINDPLLNV IADKNEGKPI SKKPVAGTLP NRFKAEIPGE FKPVECRQAV ISAWREIAGA VWNKYIEPVA IYGKGTKEIW ERQVNNFWEV SWVVSDNAES DDLLDRRKNW RSYVQAEEPG DKCTIMGNLQ ELSGHTRSLN SKKQDEFWGE LRKKVKALEL RKDERLCAVT IIKRLFPFTA KTVLGWDVPT SYPSNSNISA VHWVEKVMQN DTEKVVNFLE YSRNCGLAPE GGKQSAQIYC LRQMQKEKPE IAAFAKLNGN LFFESTLQND NLWDESIKEQ RKHLTKLLKE FKQSPEPFYA VLIMDGDSLG NLLRINDSAE VSQALSRFND MVPKILEQNN GVLVYAGGDD VLALLPLEDA IKTAVEISRA YSNSFSGRLA NGEATISAGI VYAHNHAPLK SILQEAHRLL DEIAKEETGR SSLAVSVWKT AGRVLQWSAP WEVITSGDSC LVDELVEDFR GKSSYEDQYN SSFFYNLRKR FDWLSGDNNI LTFEEAVDLL AAEYLKNRGR ENIAEATAKS RVEKLLMFCR RFLRGPDGVQ SLNKLNVDGA LLVRFLAEKG VVE
|
| |