| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_4193 |
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| Symbol | |
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| ID | 5714724 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009959 |
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| Strand | + |
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| Start bp | 38969 |
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| End bp | 40258 |
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| Gene Length | 1290 bp |
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| Protein Length | 429 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641277088 |
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| Product | TRAP dicarboxylate transporter, DctM subunit |
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| Protein accession | YP_001542384 |
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| Protein GI | 159046716 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCCCC TGCTCGGCGC CGGCCTTTCC ATCGTGCTTC TGTGCGGCCT GCTGGTCTTC
CGCATCCCGA TGATCGTCGC GATCATGTCG GTCGTGTTCT TCAGCAACTT CATGTCCGGC
GCCTGGATGC TGACCCTGCC GCAGACGATG ATGTCGGGGA TCAGCCGCTT CGTGCTGATC
GCCCTGCCGC TTTTCGTGCT GGCGGGCGGG ATCATGAATG CCGGGGGGAT CTCCGGGCGA
CTGTTTGAAT TCGCCCGCGC GCTGGTCGGC TCGCTCCGGG GCGGGCTGGC CCATGTCAAC
GTGGTCACCA GCATGTTCTT CGGCGGCATG ATCGGCTCGT CCACCGCCGA TCTCGCCGGC
ACCGGGTCCA TCGTGATCCC CGAGATGCGC AAGAACGGCT ACCCGGCGGA TTTCTCGGCG
GCGCTGACGG CCTCCTCGGC GGGGATCGGC CCGATGATCC CGCCCAGCTC GCCCATGATC
CTCTACTCGG CCATGACCGG CGTGTCCCTG GGCGCGCTGT TCCTCGCGGG CCTGATTCCG
GGTCTTTTGC TGGGCTTTCT GCTGATGCTG ATCGTGGCCT GGCTGGCCAA GCGCAACCGG
TGGGAGGCCT ATGCCGCCTT CTCCCTGTCG GAAGTGGTCC GCACCGGGCG CCGCGCGATC
CTGTCCTTCG GAATGCCCCT GATCATCGTC GGCGGGCTCG TGGTCGGCAT CTTCACCCCG
TCCGAGGCCG GCGCCTTCGC CGTGGTCTAC GCCCTTGTGC TGGCCACGGT CGTCCACCGG
ATGCTCGATT TCCGCGGGCT CTACCGGGTG CTGGCCAACG CGGTCCAGCT CAGCGGCGAG
CTGCTGATCA TCGTCGGGCT GTCCTTCGCC CTCGGCTCGG CCCTGACCAA CGCCCGGGTC
CCGGAATTCC TGGTGGAGTT CATCGACTTC GCCACCGTGA TCGACAGCAT GTATTTCCGG
CTGCTGGTGC TGCTGGCGCT GGCGATCCTG GCGGGGATGA TCCTCGATCC GCTGATCCCG
GTGCTGATGC CGATCATCCT GCCGACGCTG ATCTTCTACG AGGTCGACCT GGTGCATTTC
GGCGTGCTGA TGGTGATCGC CGTTGTGATC GGGCAGGTGA CACCGCCCTT GGCCATCGCC
CTGATCATCG CCGGGAAGAT CGCGGATATA GACCAGATCC GGGTGATGAA GGCGAACATG
CCCTTCTTCC TCGGCATCGT CGCCTTTTTG CTCTTCGCCA TCGCGGTGCC GGGCCTCGCG
ACCTGGCTGC CTGACCTGAT GCGCAACTAG
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| Protein sequence | MTPLLGAGLS IVLLCGLLVF RIPMIVAIMS VVFFSNFMSG AWMLTLPQTM MSGISRFVLI
ALPLFVLAGG IMNAGGISGR LFEFARALVG SLRGGLAHVN VVTSMFFGGM IGSSTADLAG
TGSIVIPEMR KNGYPADFSA ALTASSAGIG PMIPPSSPMI LYSAMTGVSL GALFLAGLIP
GLLLGFLLML IVAWLAKRNR WEAYAAFSLS EVVRTGRRAI LSFGMPLIIV GGLVVGIFTP
SEAGAFAVVY ALVLATVVHR MLDFRGLYRV LANAVQLSGE LLIIVGLSFA LGSALTNARV
PEFLVEFIDF ATVIDSMYFR LLVLLALAIL AGMILDPLIP VLMPIILPTL IFYEVDLVHF
GVLMVIAVVI GQVTPPLAIA LIIAGKIADI DQIRVMKANM PFFLGIVAFL LFAIAVPGLA
TWLPDLMRN
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