| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3978 |
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| Symbol | |
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| ID | 5714507 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009957 |
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| Strand | + |
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| Start bp | 37217 |
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| End bp | 38371 |
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| Gene Length | 1155 bp |
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| Protein Length | 384 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641276891 |
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| Product | lytic transglycosylase catalytic |
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| Protein accession | YP_001542187 |
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| Protein GI | 159046517 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGACGTCTA GCCTGCCTCA TATCCTCGCG TTTTGCCTGC TGCCCGGTCT CGGCTTCGCC
CAAGGTGTGC CGACCAATGA CAGTGGGCTG ACCGCGCGTG ACATCGTCGA GACCGGGGAT
CGAGAGACAG ACCTTGCCAT CCAGGCCGAC AAACTTGCAG TGCGCGAACT CATCGCCGAG
ATCGAACGGG AGCAGCTGGA AACCCTCCGA CGCATCCTCG ATGCCCAGAC CAGCTTCGGC
GGTCAGGGCC TGCCCGCCAT GGTCTCGGGG CTGGAAAGCG GCAGCGGCAA TCCCGACCGC
GCCGTGGAAG CCGTCTATGG CACGGGCGAG ATAGATCCCA ATCCCGGCGG TGCGCAGATG
TTCGGCGACG CGTCCGAGAC CATCGAGCAG CTCATCATCC GCGTCGCCCA GGAAACCAGC
GGCTTTGCGG GAGTTGGCCG CGCAGGGCTC TCACCCGTCC AGTGGCGAGC GCTTCTACAG
GCCCTCATCT GGCAGGAAAG CCGGTTTACG ATTGGGGCAC GGTCTCCCGT TGGCGCCTAT
GGTCTCACCC AGATCATGCC GGGCACCGCC AGCGATCTCG GCATCAATCC GGAATATTAC
GACAGCCCCT ATCTGCAGGT GCATGGTGGC GCGCGCTATC TCGCGACCCA GCTCAACACA
TTCGATGGCA ACATCATCAA CGCCCTCGCG GCCTATAACG CCGGACCCGG CCGGGTTTTC
GAGTATGGCG GCGTGCCACC CTTCCGCGAG ACCCAGCACT ACGTGTCGGT CATCCCTGAA
CGCTACAATC TCTATCTGAC CCGTATCGGC GGGATCGAAG CGCTTGGCAC GATCGACCCC
ACGCTTCTCG CCAATGCCAA CCTCTCGCTC ACGGGTCATG GGGCGGCCTT TTATGGCAGC
AACTCACCAG CCGCGATCCG CCAAGCCGCC CTGCGCATCC GCGATATCGT CGAACGGATT
TCCGAGACTG AAGACGTGCA GGAAAGCATC GCACTCAACA CCTATGCCCG CGCCGAACTC
GTGCGCCTCG TCGCTGCCCG CATCCGGCTT CAGGCGGCGC GCACCCGCGT CCTTTCCGCC
GAAGAGCTGG CCCAGGCCAG TGCGCGTATG GCCGAAGGCA CGTTCATGGA ATTCACGATC
AGGGAGATAG ACTGA
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| Protein sequence | MTSSLPHILA FCLLPGLGFA QGVPTNDSGL TARDIVETGD RETDLAIQAD KLAVRELIAE
IEREQLETLR RILDAQTSFG GQGLPAMVSG LESGSGNPDR AVEAVYGTGE IDPNPGGAQM
FGDASETIEQ LIIRVAQETS GFAGVGRAGL SPVQWRALLQ ALIWQESRFT IGARSPVGAY
GLTQIMPGTA SDLGINPEYY DSPYLQVHGG ARYLATQLNT FDGNIINALA AYNAGPGRVF
EYGGVPPFRE TQHYVSVIPE RYNLYLTRIG GIEALGTIDP TLLANANLSL TGHGAAFYGS
NSPAAIRQAA LRIRDIVERI SETEDVQESI ALNTYARAEL VRLVAARIRL QAARTRVLSA
EELAQASARM AEGTFMEFTI REID
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