| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3895 |
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| Symbol | |
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| ID | 5714424 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009956 |
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| Strand | - |
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| Start bp | 118732 |
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| End bp | 120516 |
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| Gene Length | 1785 bp |
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| Protein Length | 594 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641276808 |
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| Product | gluconate 2-dehydrogenase (acceptor) |
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| Protein accession | YP_001542104 |
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| Protein GI | 159046433 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 0.241761 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTGAGC GTCGTTTACC CAAAACCGAT GTCGTGATCG TGGGCGGCGG CTGGACCGGC
CTGACCGCCG CTTACGAGTT GGCCCATGCC GGCCAACGCT GCGTCGTGCT GGAACGCGGG
CACCACCGCC ACGATGCCAC GTCCTTCGGC AGTCCGGAGG AGCATGACGA GCTGAAATAT
GCCCTGCGCT ACGGCCACAT GCAGGACGTC AAGAAAGAGA CCCTGACCTT CCGCAACTCA
CGCGATCAAC GCGCGCTCCC GATGCGGCGG CTGGGATCTT TCCTGCCCGG CACTGGGCTG
GGCGGCGCGG GCATCCACTG GAACGGCCAG ATCTGGCGCC CCCTGCCTTC GGACTTGGAA
ATGCGCAGCC ATTACGAGGA CCGCTACGGC AGCCAATTCA TCCCCGACGA ACTGAGCATC
CAGGACTGGG GTGTCACCTA TGACGAGCTG GAACCGCATC TCGATTTCTT CGAGAAGATC
TGCGGCGCTG CCGGGGCCGC TGGTAACCTG CGCGGCGAGC GTCAGGTAGG CGGCAACCCT
TTCGAGGGGC CGCGCAGCGA CGGCTACCCC AACCCGGCGA TGAAACAACC CATTTCGAAC
ACCAAGTTCG GTCGCGCCGC CGAGCGGATG GGTCTGAACC CTTTTCCGAT GCCCTCGGCC
AACGTGACCC AAGCCTATGA AAATCCTTAC GGCGCGCAGC TGCATCCCTG CACCTACTGC
GGCTTTTGCG AGCGGTTCGG TTGCGGCTAT TTCGCCAAGG CCGACCCGAT CATCTGCGTC
TATGACCGGA TCAAGGATCA CGAGAATTTC GAGATCCGCT TCGATGCGCA GGTCCTGCGC
GTCACCAAAT CACAGGACGG TCAGACCGCC ACCGGGGTCA TCTACCTCGA CGAGGACGGG
GTAGAGGTAT TTCAACCTGC CGATACGGTC TGCCTGAACG CCTACAGTTT GTGGAACGTG
CACCTGATGC TGGTGTCGGG CCTGGGCACG CCCTACGATC CCGAAACGCG GCAGGGCACG
GTCGGGCGCA ACTACAGCTA TCAGACCATC GCCGCGGTCG ACGCGTTCTT TGACGAGACC
GTGCAGACCG ACCCGTTCAT GGGGGCGGGC GCGCTCGGTA TCGTTGTCGA CGATTTCAAC
GGCGATAACT TCGATCATTC CGACCTGGGC TTCGTCGGCG GCGGCTATAT TGCCTGCAAA
CAGTATCACG GCCGCCCGAT CAGCTACCAG CCCGTGCCCG AAGGCACGCC CCCCTGGGGT
GCCGAGTGGA AGGCCGCGGT GCGCGAGAAC TACACGCGAC ATGCGGACCT GGTGATCCAC
GGCTCCAGTG TGTCGACACC CGAGAACTAC CTCGACCTCG ACCCGACCTG GACCGATGCC
TATGGGCGCC CGCTTCTGCG GATGACCTTC AACTTCCCCG ACACCGACCG GCGCATGTCG
GATTACGTGA TGAACCGCGC GGTCGAAATC GCGCAGGAGA TGGACAATGT CACCTCCGTC
AGCTCCGTGA ACCTCGCAGC CGAGGGCAAG AACTACTCCA TCGTCCCCTA CCAGACGACG
CACAACGTCG GCGGCGCGGT CATCGGCACC GACCCTGAAA CCTCGGTCGT CAACCGCTAC
GGTCAGATGT GGGACCACCA CAACGTCTTC GTTTTCGGGG CCTGCCTCTT CCCGCAGAAC
CTCGGCTACA ACCCCACCGG TCCGCTCATG GGGCTCGCGT ATTGGACGCT TGAGCACATG
AAGCGCGACT ACCTCCCCAA TCCCCGCCCC CTGATGGACG CCTGA
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| Protein sequence | MAERRLPKTD VVIVGGGWTG LTAAYELAHA GQRCVVLERG HHRHDATSFG SPEEHDELKY
ALRYGHMQDV KKETLTFRNS RDQRALPMRR LGSFLPGTGL GGAGIHWNGQ IWRPLPSDLE
MRSHYEDRYG SQFIPDELSI QDWGVTYDEL EPHLDFFEKI CGAAGAAGNL RGERQVGGNP
FEGPRSDGYP NPAMKQPISN TKFGRAAERM GLNPFPMPSA NVTQAYENPY GAQLHPCTYC
GFCERFGCGY FAKADPIICV YDRIKDHENF EIRFDAQVLR VTKSQDGQTA TGVIYLDEDG
VEVFQPADTV CLNAYSLWNV HLMLVSGLGT PYDPETRQGT VGRNYSYQTI AAVDAFFDET
VQTDPFMGAG ALGIVVDDFN GDNFDHSDLG FVGGGYIACK QYHGRPISYQ PVPEGTPPWG
AEWKAAVREN YTRHADLVIH GSSVSTPENY LDLDPTWTDA YGRPLLRMTF NFPDTDRRMS
DYVMNRAVEI AQEMDNVTSV SSVNLAAEGK NYSIVPYQTT HNVGGAVIGT DPETSVVNRY
GQMWDHHNVF VFGACLFPQN LGYNPTGPLM GLAYWTLEHM KRDYLPNPRP LMDA
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