| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3817 |
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| Symbol | |
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| ID | 5714346 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009956 |
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| Strand | + |
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| Start bp | 25016 |
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| End bp | 26218 |
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| Gene Length | 1203 bp |
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| Protein Length | 400 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641276732 |
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| Product | beta-ketoadipyl CoA thiolase |
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| Protein accession | YP_001542028 |
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| Protein GI | 159046357 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0183] Acetyl-CoA acetyltransferase |
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| TIGRFAM ID | [TIGR01930] acetyl-CoA acetyltransferases
[TIGR02430] beta-ketoadipyl CoA thiolase |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.342628 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 0.265145 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGACGCAG TGATTTGCGA TGGGGTCCGA ACCCCGATCG GGCGCTATGG CGGGGCGCTG
TCCTCGGTGC GGGCCGATGA CCTCGCCGCC CTGCCCATCG CAGCCCTGAT GGCGCGCAAT
CCGGGTGTGG ACTGGGCCCG GGTCGACGAG GTGATCTATG GCGCCGCCAA CCAGGCCGGG
GAAGACAACC GCAACGTCGC GCGCATGGCC GCCCTGCTCG CCGGTCTGCC CGAGGAGGTG
CCCGGCCTCA CGGTGAACCG GCTCTGTGCC AGTGGCATGG ACGCGGTCGG CGCTGCCGCG
CGCGGGATCA AGGCCGGGGA ATATGACCTG GCCATCGCCG GCGGGATCGA GAGCATGAGC
CGCGCGCCCT TCGTCATGCC CAAGGCCGAG AGCGCGTTTA CCCGCGCCGC CACGGTCCAC
GACACCACCA TCGGCTGGCG CTTCGTCAAC CCGAAGATTG CGGCAATGCA TGGCATCGAT
ACGATGCCGC AAACCGCCGA CACCGTCGCC GCCGCCTACG AGATCAGCCG CGCCGACCAG
GACGCCTTCG CCGCGCGGTC CCAGGCCCGC TGGGCCGCCG CCGACGCAGC CGGGCTCTTT
GCCGACGAGA TCGTGCCGGT CCCGGTGCCC CAGCGCGGGA GTGCCCCGAT CCTCGTGGAC
CGGGACGAAC ACCCCCGCCC GGGCACCGAT GCCGCCCGGC TGGCCGGGCT GAAGGGCATC
AACGGGCCCG GTCTGTCGGT CACGGCGGGC AATGCCAGCG GCGTGAACGA CGGCGCCGCG
GCGCTGCTGA TCGCGTCGGC CGCCGCGGCG CGGGCCCATG GGCTGACCCC GATGGCGCGG
GTGGTCGGCA TGGCCTCCGC CGGGGTGGCG CCGCGTGTCA TGGGAATTGG CCCCGTGCCC
GCCAGCCGCA AGCTGCTGGA CCGCGCGGGC CTGACCCTCG ACCAGATGGA CGTGATCGAG
CTGAACGAGG CCTTCGCGAG CCAGAGCCTC GCGACACTGC GCCAGCTTGG CCTGGCCGAT
GACGATGTCA GGGTGAACCC CAATGGCGGC GCCATCGCCA TGGGCCATCC GCTGGGCATG
TCCGGCGCGC GGCTGGTGCT GACGGCGGCG CATCAGCTCA GGCGCACGGG CGGGCGCTAT
GCGCTCTGCA CCATGTGCGT CGGCGTGGGC CAGGGCACGG CCCTGATACT CGAACGCGTC
TGA
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| Protein sequence | MDAVICDGVR TPIGRYGGAL SSVRADDLAA LPIAALMARN PGVDWARVDE VIYGAANQAG
EDNRNVARMA ALLAGLPEEV PGLTVNRLCA SGMDAVGAAA RGIKAGEYDL AIAGGIESMS
RAPFVMPKAE SAFTRAATVH DTTIGWRFVN PKIAAMHGID TMPQTADTVA AAYEISRADQ
DAFAARSQAR WAAADAAGLF ADEIVPVPVP QRGSAPILVD RDEHPRPGTD AARLAGLKGI
NGPGLSVTAG NASGVNDGAA ALLIASAAAA RAHGLTPMAR VVGMASAGVA PRVMGIGPVP
ASRKLLDRAG LTLDQMDVIE LNEAFASQSL ATLRQLGLAD DDVRVNPNGG AIAMGHPLGM
SGARLVLTAA HQLRRTGGRY ALCTMCVGVG QGTALILERV
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