Gene Dshi_3808 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_3808 
Symbol 
ID5714337 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009956 
Strand
Start bp17704 
End bp18195 
Gene Length492 bp 
Protein Length163 aa 
Translation table11 
GC content63% 
IMG OID641276723 
Productputative monovalent cation/H+ antiporter subunit E 
Protein accessionYP_001542019 
Protein GI159046348 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1863] Multisubunit Na+/H+ antiporter, MnhE subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.53351 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value0.27377 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGGCAC GACTGATCCC CCATCCGTTC CTGAGCCTGA CCCTGGTGCT GGTCTGGCTG 
GCCCTGGTGA ACAAGTTCAC ACTGGGCAAC CTGATCCTCG GCAGCGCCTT CGGGCTGGTG
ATCCCGATGC TGACCGCGGC CTATTGGCCG AACCGGCCCA GGATCGGGCG GCCCCTGAAG
ATCGCGGAAT ACGTGCTGAT CGTGCTGTGG GATATCGTGG TGGCCAATGT GCAGGTGGCC
ATGATCATCC TGTTCAAGCC CGAAAAGAAC ATCCAGTCTC ACTGGATCCC GGTACCGGTG
GAGCTGACCT CCGCCGAGGC GATCACGGTG CTGGCGGGCA CGATCACCAT GACGCCCGGC
ACGGTGTCGG CCACGCTGGC CGCCGATGGC AGCTGCATCC TCGTGCATTG CCTGCATACC
GACGACCCGG ACGCCGTGCG CGACGAGATC AAGACCCGCT ATGAACGACG CCTGAAGGAG
ATTTTCGCAT GA
 
Protein sequence
MLARLIPHPF LSLTLVLVWL ALVNKFTLGN LILGSAFGLV IPMLTAAYWP NRPRIGRPLK 
IAEYVLIVLW DIVVANVQVA MIILFKPEKN IQSHWIPVPV ELTSAEAITV LAGTITMTPG
TVSATLAADG SCILVHCLHT DDPDAVRDEI KTRYERRLKE IFA