| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3651 |
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| Symbol | |
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| ID | 5714181 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009955 |
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| Strand | + |
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| Start bp | 49186 |
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| End bp | 50262 |
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| Gene Length | 1077 bp |
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| Protein Length | 358 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 641276569 |
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| Product | TrbL/VirB6 plasmid conjugal transfer protein |
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| Protein accession | YP_001541865 |
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| Protein GI | 159046193 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3704] Type IV secretory pathway, VirB6 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0019924 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGCGTCG TCACCTATTT CGTTGAAACC TCCCAGGCCT ATCTCGACAC CGCTGCCGAA
ACCCAGTTTG GTGCGGTTGC GGAAACAGTC GGCACGCTCC TGGTTTTGGG GACAACGCTG
GTGGTGATCC TCGTCGGCAT CAACATGATC TATCAATATC GGGCCATGGA TGGGCACACA
GCCTTCTGGC TCGCGGTCAA GATCGGACTC ATCGGGATAT TCGCGACCAA TTGGATGCAG
TTCAACGCGT TCTCATCTGC CATTCTCTAT GGGATCGACA GTATCGCGGG CGCGCTGGTG
GCCTCGGTCG GCGGCGGCAG TCCGGGGCCC TCTGGAACTT TCGCTGAAGA ATTCGACCGG
CTGATCGCGG AGCTGGGCGA CTATCTGAAC GCTGCCGGGT CCGAGCTGAA CTGGATGGCC
GGCGCCATGC TCGACATCGT CGGTGTGCTT CTGCTCTCGA TCCTCGGAGG GCTGGCCGCC
TTCATCCTCG TGGCCTCCCG ACTGATGATC GCGCTTCTGA TCGGAATCGC CCCGGTGATG
ATTTTCCTGA CCCTCTTCGA GGTCACCAAG GATTATTTCG CGCGCTGGTT ATCCGCGCTT
ATCTCCTTCG CGATCTACCC TATCGTGGTC GCAGGGGTCT TCGCGACCGT CACCGGGGTG
GCCTCGGCTC TCATAGGCGA GTTGGGTAAT CCGGAAGGGG CTTCCAACAT CGGCGCGCTC
ATACCTTTCT TCATGATGGT GCTCATGGCC AAGGGGTTCA TAATCGCAAC ACCCTTCATC
GTCCGCGCGA TTTCCGGCAA CATCATGATG CCGGCGCTCT CCGGCGGTCT CGGTGGCGGA
TACAACTTCG CTCGCGCCGC CATGGGCAGC CAGCAGGCCT ACAACCGCTA CCTAATTGGA
GGCGCAAGCG GCGCAGAATA CGCGGCCATC CGAGCGCGCC AGTTCTTTGG CGTGCAGCAA
ATGCCAATGC GGCAAGGCAT GGAGCAGACG GGTTCCGGAG GCGGCACAGG ATCCGCAGAC
TCGGGATCAA AAATGCTGGC GCAGCTTGCG AGACTGGGAC GGCTTGGACG ACGGTGA
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| Protein sequence | MSVVTYFVET SQAYLDTAAE TQFGAVAETV GTLLVLGTTL VVILVGINMI YQYRAMDGHT
AFWLAVKIGL IGIFATNWMQ FNAFSSAILY GIDSIAGALV ASVGGGSPGP SGTFAEEFDR
LIAELGDYLN AAGSELNWMA GAMLDIVGVL LLSILGGLAA FILVASRLMI ALLIGIAPVM
IFLTLFEVTK DYFARWLSAL ISFAIYPIVV AGVFATVTGV ASALIGELGN PEGASNIGAL
IPFFMMVLMA KGFIIATPFI VRAISGNIMM PALSGGLGGG YNFARAAMGS QQAYNRYLIG
GASGAEYAAI RARQFFGVQQ MPMRQGMEQT GSGGGTGSAD SGSKMLAQLA RLGRLGRR
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