| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3604 |
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| Symbol | |
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| ID | 5714134 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009955 |
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| Strand | + |
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| Start bp | 9993 |
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| End bp | 11330 |
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| Gene Length | 1338 bp |
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| Protein Length | 445 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 641276522 |
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| Product | amino acid permease-associated region |
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| Protein accession | YP_001541818 |
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| Protein GI | 159046146 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0531] Amino acid transporters |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.466276 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGAGCG AAAAAGAAAC GTACCGCGAA AATTCCATCA GTCTGGGCGG AGCCGTTGCG
ATGGGGACAG GCGTGATGAT CGGCGCTGGA ATCTTTGCGT TGACGGGGCA AATCGCGCAG
CTCGCCGGCC CGCTTTTCCC GCTTGCATTC ATCGCCGGCG CGGTCGTCAC AAGCTTCAGC
GCCTACAGCT ACATCAGGAT GTCGAACAAA TGGCCGTCCT CGGGTGGCAT CGCCATGATC
CTGCAGAAAT GCTATGGCCC CGGAGCCATC GCGGGCGGGG CCGCACTGCT GATGGCGCTC
AGCATGGTGA TCGCGGAAAG CCTCGTCGCG CGAACCTTCG CCACCTATGT CCTGCGCCCT
TTCGATATCG AAGGTGGCCC ATTGGTCCCC GCTCTGGCTG TGGCCGTGAT CGTTTTCGCC
TTTTTGGTGA ACATGGCCGG AAACCGCTCG GTCGGGCTGT TCTCGTTGAT CATGGCCGCG
ATCAAGATCG GAGGCATAGC TCTGTTTGGC ATCGCGGCCC TGTGGTCCAG TGGTTTTGCG
TTCGCCGCGG CGTCCGAGAC CTCACAATCC TACGGGCTCA CGGGGTTCAT CGCCTCTACG
GCGCTGGCCA TCCTTGCGTT CAAGGGATTC ACCACGATCA CCAACAGCGG AGCCGAGATC
ACTGAACCAA ATCGCAATGT TGGCCGAGCG ATCATGTTCT CTATCGGAAT CTGCGTCGTC
GTCTACCTGT TGGTCGCCTA CGGGGTCGGT TCGAGTCTCA CGATCGAGGA GATCATCTCA
GCGCGTGACT ATTCGCTGGC ACAAGCGGCG CAGCCCGCCC TTGGACAAAC CGGCTTCATA
CTCACGGTGA TCCTGGCCGC TGTCGCAACG GCGTCCGGCG TTCTGGCCAG CGTCTTCGCG
GTGTCGCGTA TGCTGGCGAT GCTGACCGAC ATGGAAATGA TCCCGCACAG CCACTTCGGT
ATGCCAGGTC CCATCCAACG CCACACCCTG GTCTATACTG TCGTCATCGC CGCGACGTTG
GCCGTGCTCT TTGATTTAGG CCGGATCGCA TCCCTCGGTG CTTTCTTTTA CCTCGTCATG
GACATGATCA TACATTGGGG CGTGTTCCGC TATCGTCGAG CAGACGTCGG CGCCTTCGGT
ATCGTGCTTT TGACTGCCCT GGCGCTCGAT GCGATAGTAC TGGCAGCTTT CACCGTGATG
AAGCTTCAAA GCGACCCGAT GATCGTTCTC TACGCCGCTG TCGGGATGAT CGCTGTGTTC
GCCTTCGAGC GCGTTTACTT GTCGCAATGG GTGGCACCGC AAGTCGCCCC CGCCCCCGCC
CACGCCCACG GTGATTAG
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| Protein sequence | MQSEKETYRE NSISLGGAVA MGTGVMIGAG IFALTGQIAQ LAGPLFPLAF IAGAVVTSFS
AYSYIRMSNK WPSSGGIAMI LQKCYGPGAI AGGAALLMAL SMVIAESLVA RTFATYVLRP
FDIEGGPLVP ALAVAVIVFA FLVNMAGNRS VGLFSLIMAA IKIGGIALFG IAALWSSGFA
FAAASETSQS YGLTGFIAST ALAILAFKGF TTITNSGAEI TEPNRNVGRA IMFSIGICVV
VYLLVAYGVG SSLTIEEIIS ARDYSLAQAA QPALGQTGFI LTVILAAVAT ASGVLASVFA
VSRMLAMLTD MEMIPHSHFG MPGPIQRHTL VYTVVIAATL AVLFDLGRIA SLGAFFYLVM
DMIIHWGVFR YRRADVGAFG IVLLTALALD AIVLAAFTVM KLQSDPMIVL YAAVGMIAVF
AFERVYLSQW VAPQVAPAPA HAHGD
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