18 homologs were found in PanDaTox collection
for query gene Dshi_3540 on replicon NC_009952
Organism: Dinoroseobacter shibae DFL 12



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_009952  Dshi_3540  reaction center protein H chain  100 
 
 		 256 aa  525  1e-148  Dinoroseobacter shibae DFL 12  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007802  Jann_0155  photosynthetic reaction center subunit H  59.77 
 
 		 260 aa  303  1.0000000000000001e-81  Jannaschia sp. CCS1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007493  RSP_0291  reaction centre H protein  60.24 
 
 		 260 aa  294  8e-79  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.152025  n/a   
 
 
-
 
NC_009049  Rsph17029_1934  photosynthetic reaction center subunit H  60.24 
 
 		 260 aa  294  8e-79  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009428  Rsph17025_1004  photosynthetic reaction center subunit H  59.84 
 
 		 260 aa  292  4e-78  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  1  normal  0.61506 
 
 
-
 
NC_007643  Rru_A0617  photosynthetic reaction center, H-chain  43.48 
 
 		 257 aa  188  9e-47  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.110547  n/a   
 
 
-
 
NC_009485  BBta_6411  reaction center protein H chain (photosynthetic reaction center H subunit)  44.27 
 
 		 260 aa  186  2e-46  Bradyrhizobium sp. BTAi1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007958  RPD_3730  photosynthetic reaction center subunit H  42.91 
 
 		 254 aa  182  6e-45  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.0219155  hitchhiker  0.00401595 
 
 
-
 
NC_011666  Msil_2036  photosynthetic reaction center H subunit  41.73 
 
 		 253 aa  179  4e-44  Methylocella silvestris BL2  Bacteria  n/a    normal  1 
 
 
-
 
NC_007925  RPC_1319  photosynthetic reaction center subunit H  40.8 
 
 		 255 aa  174  9.999999999999999e-43  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.474837  normal  0.244306 
 
 
-
 
NC_007778  RPB_3975  photosynthetic reaction centre, H-chain  41.94 
 
 		 254 aa  174  9.999999999999999e-43  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.0176232  normal  0.276586 
 
 
-
 
NC_008789  Hhal_1631  photosynthetic reaction center subunit H  39.03 
 
 		 278 aa  166  4e-40  Halorhodospira halophila SL1  Bacteria  normal  0.768314  n/a   
 
 
-
 
NC_010725  Mpop_5355  photosynthetic reaction center H subunit  35.69 
 
 		 257 aa  157  1e-37  Methylobacterium populi BJ001  Bacteria  normal  0.356568  normal  1 
 
 
-
 
NC_011004  Rpal_1736  photosynthetic reaction center H subunit  41.7 
 
 		 255 aa  157  2e-37  Rhodopseudomonas palustris TIE-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_010505  Mrad2831_1842  photosynthetic reaction center subunit H  35.02 
 
 		 259 aa  156  3e-37  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  0.0733944 
 
 
-
 
NC_011757  Mchl_5277  photosynthetic reaction center H subunit  35.29 
 
 		 257 aa  153  2e-36  Methylobacterium chloromethanicum CM4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010172  Mext_4810  photosynthetic reaction center subunit H  35.29 
 
 		 257 aa  152  5e-36  Methylobacterium extorquens PA1  Bacteria  normal  0.54526  normal  0.0831803 
 
 
-
 
NC_010511  M446_3724  photosynthetic reaction center subunit H  38.82 
 
 		 261 aa  151  1e-35  Methylobacterium sp. 4-46  Bacteria  normal  1  normal  0.055841 
 
 
-
 
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