Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_3526 |
Symbol | dxs2 |
ID | 5713757 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | + |
Start bp | 3704933 |
End bp | 3706909 |
Gene Length | 1977 bp |
Protein Length | 658 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641269455 |
Product | 1-deoxy-D-xylulose-5-phosphate synthase |
Protein accession | YP_001534860 |
Protein GI | 159046066 |
COG category | [H] Coenzyme transport and metabolism [I] Lipid transport and metabolism |
COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCCCCGGG CCCGCATTTC GCACCAGACC GCGATGGAGG AGACCACCAT GACCAACCCC CGCCCGAAAA CCCCGACACT CGACCGCGTC GCCTGTCCCG CCGATCTCAA GGCGCTGACC GACCGGGAGC TTGCCACCCT GGCCACCGAA CTGCGCGCCG AAGTGATCTC CGCCGTGTCC GAGACGGGCG GGCATCTCGG CTCCTCGCTC GGCGTGGTCG AGCTGACCGT GGCGATCCAC GCAGTGTTCA ACACGCCCTT CGACAAGCTC GTCTGGGACG TGGGCCACCA ATGCTATCCC CACAAGGTGC TGACCGAGCG CCGCGACCGC ATCCGCACCC TGCGCCAGAA GGGGGGCCTG TCGGGCTTCA CCAAGCGCAG CGAGAGCATC TATGACCCGT TCGGCGCGGC CCATTCGTCG ACGTCGATTT CCGCCGCGCT GGGCTTTGCC ACGGCGCGCG ACCTGGGCGG GCCCACCGGC GACGCCATCG CGGTGATCGG CGACGGCTCG ATCAGCGCCG GCATGGCCTA CGAGGCGATG AACAACGCGG GCTCCGAGAA GCGCCGCCTC TTCGTGATCC TGAACGACAA CGAGATGTCC ATCGCCCCGC CCACGGGCGC GATGTCCACC TATCTCAGCG ATCTGGCCTC GTCTGGCCCG CTCTATGCCT TGAAGGAACT GGCCGAGGGC GTGGAACGCA GCCTGCCCGG CCCCTTGCGC GAAGGGGCGC AGCGTGCGCG CAACCTGGTG ACCGGGGAGC ATGGCTCCTC CGCGACCCTG TTCGAGGAGC TGGGCTTCGA CTATATCGGC CCGATCGACG GGCATGACAT CCCGCAGCTG TTGCAGGTCC TGCGCGCCGC ACGGGCCAAG GCCAGCGGGC CGGTCCTGAT CCATGCCTGC ACCGTCAAGG GCAAGGGCTA CTCCCCTGCC GAGCTGTCCG ACGATTGCTA CCACGGGGTC GCCAAATTCG ACGTGGCTAC GGGCAAGCAG CAGAAATCCG CCCCCAACGC GCCGGCCTAT ACCAAGGTGT TCGGCGCGAC CCTGACGGCG GAGGCCGAGC GCGACTCGCG CATCTGCGCG GTGACCGCCG CCATGCCCGG GGGCACGGGC GTCAACATCA TGGGCAAGCG GTTTCCGGGG CGGGTCTTCG ATGTGGGCAT CGCCGAACAG CACGCGGTGA CCTTCGCCGC CGGACTTGCG GCGGGCGGGA TGAAGCCCTT CTGCGCGATC TATTCCAGTT TTCTGCAGCG CGGCTATGAC CAGGTGGTCC ATGACGTGGC GCTGCAAAAA CTGCCGGTGC GGTTCGCCAT CGACCGCGCC GGGCTGGTGG GGGCCGATGG GCCGACCCAT GCGGGCGCCT ATGACATCGC GTATCTGTCC AACCTGCCCA ACATGACCGT CATGGCCGCC GCCGACGAGG CGGAGCTTGT GCATATGGTC GCCACCGCGG CGGCCTATGA CGACGGGCCG ATCGCCTTCC GCTACCCGCG GGGCGAAGGC GTGGGCATCG AGATGCCGGA GCGCGGCAGC CTGCTGGAGA TCGGCAAGGG CCGCATCATC CGCGAGGGCG GGTCGGTCGC GATCCTGTCG CTCGGCGCGC ATCTGTCGGA ATGCCTCAAG GCCGCCGAGG ATCTGGAGGC GCGCGGCATC GGTGTCACCA TCGCCGATGC GCGGTTCGCC AAGCCGCTGG ATACCGACCT GATCGCGCAG CTGACCGCCA ATCACGAGGC GCTCATCACC GTCGAACAGG GGGCCGAGGG CGGCTTCGGG GCCATGGTCC TGCACTGGCT GGCCCGGACC GGGCGGCTCG ACGGGACCCT CAAGATCCGC ACCATGACCC TGCCGGACCG TTTCATCGAC CAGGCAAGCC CGGCGGATAT GTACCACGAT GCGGGGCTCA CCGCGCGTCA CATCGCGGGG CAGGTGCTGC ACCTGATGGG GGCGGAGACC GCGCTGCTGG AGGCGACGAC GGCCTGA
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Protein sequence | MPRARISHQT AMEETTMTNP RPKTPTLDRV ACPADLKALT DRELATLATE LRAEVISAVS ETGGHLGSSL GVVELTVAIH AVFNTPFDKL VWDVGHQCYP HKVLTERRDR IRTLRQKGGL SGFTKRSESI YDPFGAAHSS TSISAALGFA TARDLGGPTG DAIAVIGDGS ISAGMAYEAM NNAGSEKRRL FVILNDNEMS IAPPTGAMST YLSDLASSGP LYALKELAEG VERSLPGPLR EGAQRARNLV TGEHGSSATL FEELGFDYIG PIDGHDIPQL LQVLRAARAK ASGPVLIHAC TVKGKGYSPA ELSDDCYHGV AKFDVATGKQ QKSAPNAPAY TKVFGATLTA EAERDSRICA VTAAMPGGTG VNIMGKRFPG RVFDVGIAEQ HAVTFAAGLA AGGMKPFCAI YSSFLQRGYD QVVHDVALQK LPVRFAIDRA GLVGADGPTH AGAYDIAYLS NLPNMTVMAA ADEAELVHMV ATAAAYDDGP IAFRYPRGEG VGIEMPERGS LLEIGKGRII REGGSVAILS LGAHLSECLK AAEDLEARGI GVTIADARFA KPLDTDLIAQ LTANHEALIT VEQGAEGGFG AMVLHWLART GRLDGTLKIR TMTLPDRFID QASPADMYHD AGLTARHIAG QVLHLMGAET ALLEATTA
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