| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3474 |
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| Symbol | pcaB |
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| ID | 5712532 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 3657613 |
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| End bp | 3658659 |
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| Gene Length | 1047 bp |
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| Protein Length | 348 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641269403 |
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| Product | 3-carboxy-cis,cis-muconate cycloisomerase |
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| Protein accession | YP_001534808 |
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| Protein GI | 159046014 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0015] Adenylosuccinate lyase |
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| TIGRFAM ID | [TIGR02426] 3-carboxy-cis,cis-muconate cycloisomerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 36 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGGCTG GGGGCCAAAA CAGGCTCTTT GACGGGCTTT TTGCCGACCC AGAGATCGCG
GCGCTGTTCT CGGCAGAGAC GATGTTCGCG CATTTTCGGC ACTACGAAAT GGCTCTGACC
GAGGCCCAAG GTGCGGTGGG GCGGGTGAAA GATGCCGCCC GCATCGCAGC CCGAATTGCG
AAGTTCGAGA TCGCGCCCGA CGCTATCTCG GATCGCGTAA CGCAAGACGG TGTGCCCGTG
CCGGCCTATG TCGCGGCGTT GGAAGCGGCG CTGGGCGTGG ATGCTGCGGC GGTGCATCTC
GACGCCACGT CGCAGGACCT GATGGACACG AGCCTCGCGC TGAGCTTGCG CAGGCTGAGC
GAGGTGCTGG CAGCGCGGCT TGATCGGGTG ATCGTCGCGC TGGACGGACT GCAAGCGGCC
CAAGGTGCGC GGACCCTGAT GGGCCGCACC CGGATGCAGG CCGCCCTGCC GATCCCGGTC
GCAACACGGC TGGAGGCTTG GCAGACACCG CTCCTACGTG CCCGGGACCG ATTTCCGGAG
GCGCGCGCCG GGGTCGAACA GTTGCAGTTC GGCGGCCCGG TGGGGCAACG GTCCCCCCAG
ATGGCAGCCA TTGCCGAAAG GCTGGCCAAG GCACTCGATC TGCCGCCGCC GGGCCCGGTC
TGGCACAGCA CAAGGGACGG CGTTGTGGGC TACGGCACCT GGCTCGCGCT GGTGACCGGA
AGCCTCGGCA AGATGGGGCA GGATATCGCG CTCATGTCCC AGCAGGGATT GGACGATGCG
CGGCTCTCCG GCGGTGGGAC CAGTTCTGCC ATGCCACACA AGCAGAACCC GATTGCCGCG
GAAACCCTTG TCACCCTTGC GCGGTTCAAC GCGGTGCAGA TCGGCGGCCT GCATCAGGCT
ATGGTGCATG AACAGGAACG CTCCGGCGCA GCGTGGGCGC TGGAATGGAT GATCCTGCCG
CAGATATGCG AGGCCACCGG CGCGGCCTTG CGCCATGCGG CGGCCCTGCT TGACAGTATC
GAAACCCTTG GGAAAAAGCC TGTTTAA
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| Protein sequence | MAAGGQNRLF DGLFADPEIA ALFSAETMFA HFRHYEMALT EAQGAVGRVK DAARIAARIA
KFEIAPDAIS DRVTQDGVPV PAYVAALEAA LGVDAAAVHL DATSQDLMDT SLALSLRRLS
EVLAARLDRV IVALDGLQAA QGARTLMGRT RMQAALPIPV ATRLEAWQTP LLRARDRFPE
ARAGVEQLQF GGPVGQRSPQ MAAIAERLAK ALDLPPPGPV WHSTRDGVVG YGTWLALVTG
SLGKMGQDIA LMSQQGLDDA RLSGGGTSSA MPHKQNPIAA ETLVTLARFN AVQIGGLHQA
MVHEQERSGA AWALEWMILP QICEATGAAL RHAAALLDSI ETLGKKPV
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